plot_miRNAs_per_gene: plot expression of miRNAs in module for specific RNA (no...

In biomedbigdata/SPONGE: Sparse Partial Correlations On Gene Expression

plot expression of miRNAs in module for specific RNA (no negative values!)

Description

plot expression of miRNAs in module for specific RNA (no negative values!)

Usage

plot_miRNAs_per_gene(
  target,
  genes_miRNA_candidates,
  mi_rna_expr,
  meta,
  log_transform = T,
  pseudocount = 0.001,
  unit = "counts"
)

Arguments

target	the target gene
genes_miRNA_candidates	the miRNAs of the module to plot the relative expression against
mi_rna_expr	the miRNA expression
meta	the meta information for annotations
unit	the unit to display for the data. This parameter does not chance the behaviour of the method and the data is expected to match the provided unit
log_trasform	defaut T: whether the results should be log transformed
pseudocout	defaut 1e-3: the pseudocounts

Value

plot object

biomedbigdata/SPONGE documentation built on Feb. 6, 2023, 10:19 p.m.