plot_miRNAs_per_gene: plot expression of miRNAs in module for specific RNA (no...

View source: R/fn_spongeffects_utility.R View source: R/biomarker_plots.R

plot_miRNAs_per_geneR Documentation

plot expression of miRNAs in module for specific RNA (no negative values!)

Description

plot expression of miRNAs in module for specific RNA (no negative values!)

Usage

plot_miRNAs_per_gene(
  target,
  genes_miRNA_candidates,
  mi_rna_expr,
  meta,
  log_transform = T,
  pseudocount = 0.001,
  unit = "counts"
)

Arguments

target

the target gene

genes_miRNA_candidates

the miRNAs of the module to plot the relative expression against

mi_rna_expr

the miRNA expression

meta

the meta information for annotations

unit

the unit to display for the data. This parameter does not chance the behaviour of the method and the data is expected to match the provided unit

log_trasform

defaut T: whether the results should be log transformed

pseudocout

defaut 1e-3: the pseudocounts

Value

plot object


biomedbigdata/SPONGE documentation built on Feb. 6, 2023, 10:19 p.m.