plot_density_scores: plots the density of the model scores for subtypes (see...

In biomedbigdata/SPONGE: Sparse Partial Correlations On Gene Expression

plots the density of the model scores for subtypes (see Boniolo and Hoffmann 2022 et al. Fig. 2)

Description

plots the density of the model scores for subtypes (see Boniolo and Hoffmann 2022 et al. Fig. 2)

Usage

plot_density_scores(trained_model, spongEffects, meta_data, label, sampleIDs)

Arguments

trained_model	returned from train_and_test_model
spongEffects	output of enrichment_modules()
meta_data	metadata of samples (retrieved from prepare_tcga_for_spongEffects() or from prepare_metabric_for_spongEffects())
label	Column of metadata to use as label in classification model
sampleIDs	Column of metadata containing sample/patient IDs to be matched with column names of spongEffects scores
meta_data_type	TCGA or METABRIC

Value

plots density scores for subtypes

biomedbigdata/SPONGE documentation built on Feb. 6, 2023, 10:19 p.m.