getGroupGeneList: Create unique list of group,gene combinations from input list

In biscuit13161/UNGeneAnno: Collate Gene Annotation Data from Uniprot and NIH Gene Databases

Description

getGroupGeneList takes a mixed list of group identifiers (numeric) and gene names or a 2-column matrix of group identifiers and gene names, returning the seperated list of group identifiers and the related lists of genes.

Usage

getGroupGeneList(x, inputlist)

## S4 method for signature 'geneanno,character'
getGroupGeneList(x, inputlist)

## S4 method for signature 'geneanno,matrix'
getGroupGeneList(x, inputlist)

Arguments

x	object of class geneanno.
inputlist	vector of strings, being a mixed list of group numbers and gene names

Value

object of type geneanno; a copy of input object having the additional list of group numbers and a unique list of genes from s

Methods (by class)

• x = geneanno,inputlist = character: uses vector of characters of group ids and Gene names for inputlist.

• x = geneanno,inputlist = matrix: uses matrix of group ids and Gene names for inputlist.

Examples

data("genematrix")
ggl <- getGroupGeneList(geneanno(),mygenematrix)

biscuit13161/UNGeneAnno documentation built on May 26, 2019, 2:33 a.m.