getUniprotSummary: Gather Uniprot Data

Description Usage Arguments Value Methods (by class) See Also Examples

Description

getUniprotSummary collates data returned from a html request to the Uniport publicly available databases to populate the gene object. The query currently returns id, entry name, reviewed, protein names, genes, organism, length and "comment(FUNCTION)".

Usage

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getUniprotSummary(x, y)

## S4 method for signature 'gene'
getUniprotSummary(x, y)

Arguments

x

gene object

y

query object (see getNihQuery())

Value

gene object - a copy of the input object 'y', having the uniprot data added.

Methods (by class)

See Also

http://www.uniprot.org/help/uniprotkb_column_names

Examples

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f <- query()
slot(f,"query") <- "BRAF"
gene <- gene()
slot(gene,"query") <- slot(f,"query")
gene <- getUniprotSummary(gene,f)

biscuit13161/UNGeneAnno documentation built on May 26, 2019, 2:33 a.m.