Man pages for bjreisman/DebarcodeR
Automated Demultiplexing for Fluorescent Cell Barcoding
| apply_platemap | Updates pData and filenames with well assignments from... |
| as.flowFrame | Generic function for coercing flowFrame like objects to... |
| as.flowFrame-fcbFlowFrame-method | Coerces fcbFlowFrames to flowFrames by extracting the... |
| assign_fcbFlowFrame | Defines populations on barcoded datasets |
| assign_fcbFlowSet | Defines populations on barcoded datasets |
| calculate.ambiguity | Ambiguity cutoff |
| calculate.likelihood | Likelihood cutoff |
| cluster_fcbFlowFrame | Defines populations on barcoded datasets |
| cluster_fcbFlowSet | Defines populations on barcoded datasets |
| constrained_regression | Used to build the regression model, not to be called directly... |
| deskew_fcbFlowFrame | Corrects morphology based on scatter or uptake control for... |
| deskew_fcbFlowSet | Corrects morphology based on scatter or uptake control for... |
| doRegressConstrained | obtain residulas afer monitonically constrained regression |
| em_optimize | Defines populations on barcoded datasets |
| fcbFlowFrame-class | fcbFlowFrame —————— A containiner for barcoded... |
| fcbFlowSet-class | fcbFlowSet —————— A containiner for barcoded flow... |
| generate_regressors | Used to build the regression model, not to be called directly... |
| getAssignments | Extracts assignments from fcbFlowFrame object |
| jurkatFCB | 48 Jurkat Samples Barcoded using Fluorescent Cell Barcoding |
| match.arg1 | Option selector. |
| morphology_corr | Corrects morphology based on scatter or uptake control. |
| morphology_corr.earth | Corrects morphology using multivariate adaptive regression... |
| morphology_corr.knijnenburg | Corrects morphology based on scatter or uptake control. |
| morphology_corr.lm | Corrects morphology based on scatter or uptake control. |
| plot.fcbflowframe | Plots assignemnts |
| regression_model_matrix | Used to build the regression model, not to be called directly... |
| selectDenseScatterArea | find the area which contains 95% of the data |
| split-fcbFlowFrame-list-method | Splits a fcbFlowFrame into a fcbFlowSet with updated pData |
| split-fcbFlowSet-list-method | Splits a fcbFlowSet into a flowSet with updated pData |
