| $.shaidyRepo |
Man page
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| NGCHM |
Man page
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| NGCHM-functions |
Man page
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| NGCHM-initialization |
Man page
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| NGCHM-package |
Man page
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| TCGA.GBM.EXPR |
Man page
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| URLparts |
Source code
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| castAsInteger |
Man page
Source code
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| castListAsInteger |
Man page
Source code
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| chmAdd |
Man page
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| chmAdd,ngchm-method |
Man page
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| chmAddAxisType |
Man page
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| chmAddAxisType,ngchm,character,character,character-method |
Man page
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| chmAddAxisType,ngchm,character,character,missing-method |
Man page
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| chmAddAxisType,ngchm,character,character,ngchmJS-method |
Man page
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| chmAddCSS |
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| chmAddCSS,ngchm,character,character-method |
Man page
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| chmAddCSS,ngchm,character-method |
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| chmAddColormap |
Man page
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| chmAddColormap,ngchm,ngchmColormap-method |
Man page
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| chmAddCovariate |
Man page
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| chmAddCovariate,ngchmDataset,character,ngchmCovariate-method |
Man page
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| chmAddCovariateBar |
Man page
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| chmAddCovariateBar,ngchm,character,list-method |
Man page
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| chmAddCovariateBar,ngchm,character,ngchmBar-method |
Man page
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| chmAddCovariateBar,ngchm,character,ngchmCovariate-method |
Man page
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| chmAddCovariateBar,ngchm,character,ngchmCovariateBar-method |
Man page
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| chmAddDataset |
Man page
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| chmAddDataset,ngchm,ngchmDataset-method |
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| chmAddDialog |
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| chmAddDialog,ngchm,ngchmDialog-method |
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| chmAddLayer |
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| chmAddLayer,ngchm,matrix-method |
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| chmAddLayer,ngchm,ngchmLayer-method |
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| chmAddMenuItem |
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| chmAddMenuItem,ngchm,character,character,character-method |
Man page
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| chmAddMenuItem,ngchm,character,character,ngchmJS-method |
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| chmAddMetaData |
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| chmAddMetaData,ngchm,character,character,character-method |
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| chmAddOverview |
Man page
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| chmAddOverview,ngchm,character,numeric,numeric-method |
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| chmAddOverview,ngchm,character,optNumeric,optNumeric-method |
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| chmAddPCA |
Man page
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| chmAddProperty |
Man page
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| chmAddProperty,ngchm,character,character-method |
Man page
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| chmAddReducedDim |
Man page
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| chmAddRelated |
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| chmAddRelated,ngchm,character,character,character-method |
Man page
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| chmAddRelatedGroup |
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| chmAddRelatedGroup,ngchm,character,character,character,character |
Man page
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| chmAddRelatedGroup,ngchm,character,character,character,missing-m |
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| chmAddSpecificAxisTypeFunction |
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| chmAddSpecificAxisTypeFunction,ngchm,character,character,charact |
Man page
Man page
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| chmAddTSNE |
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| chmAddTag |
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| chmAddTag,ngchm,character,character-method |
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| chmAddTag,ngchm,character-method |
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| chmAddTemplate |
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| chmAddTemplate,ngchm,charOrFunction,character,optList-method |
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| chmAddToolboxR |
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| chmAddToolboxR,ngchm,character,character,character,character-met |
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| chmAddToolboxR2 |
Man page
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| chmAddToolboxR2,ngchm,character,character,character-method |
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| chmAddToolboxRC |
Man page
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| chmAddToolboxRC,ngchm,character,character,character,character-me |
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| chmAddToolboxRC,ngchm,character,character,character-method |
Man page
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| chmAddUMAP |
Man page
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| chmAddUWOT |
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| chmAxis |
Man page
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| chmAxisType |
Man page
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| chmBindFunction |
Man page
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| chmBindFunction,character,character,list-method |
Man page
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| chmBindFunction,character,ngchmJS,list-method |
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| chmBrowse |
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| chmColOrder<- |
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| chmColOrder<-,ngchm,optDendrogram-method |
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| chmColorMap |
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| chmColorMap<- |
Man page
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| chmColors |
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| chmColors<- |
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| chmCovariate |
Man page
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| chmCovariateBar |
Man page
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| chmCreateCollection |
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| chmCreateManagedServer |
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| chmCreateServer |
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| chmCurrentCollection |
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| chmCurrentServer |
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| chmDefaultColOrder |
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| chmDefaultRowOrder |
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| chmDeployServer |
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| chmDeployServer,ngchmServer-method |
Man page
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| chmExportToFile |
Man page
Source code
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| chmExportToHTML |
Man page
Source code
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| chmExportToPDF |
Man page
Source code
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| chmFieldAccessFunction |
Man page
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| chmGetDataset |
Man page
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| chmGetDataset,ngchmLayer-method |
Man page
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| chmGetDeployServerConfig |
Man page
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| chmGetFunction |
Man page
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| chmGetOverview |
Man page
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| chmGetProperty |
Man page
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| chmGetProperty,ngchmVersion2,character-method |
Man page
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| chmGetProperty,ngchmVersion2-method |
Man page
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| chmGetTypeInfo |
Man page
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| chmGetURL |
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| chmGetURL,character-method |
Man page
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| chmGetURL,ngchm-method |
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| chmHasProperty |
Man page
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| chmHasProperty,ngchmVersion2,character-method |
Man page
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| chmHasProperty,ngchmVersion2-method |
Man page
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| chmInstall |
Man page
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| chmInstall,ngchm-method |
Man page
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| chmLabel |
Man page
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| chmLabel<- |
Man page
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| chmLayer |
Man page
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| chmListFunctions |
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| chmListServers |
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| chmListTypes |
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| chmLoadCHM |
Man page
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| chmLoadCHM,character,character-method |
Man page
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| chmLoadCHM,character,missing-method |
Man page
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| chmLoadCHM,ngchmServer,character-method |
Man page
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| chmLoadShaidyCHM |
Man page
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| chmMake |
Man page
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| chmMake,ngchm-method |
Man page
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| chmMakePrivate |
Man page
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| chmMakePrivate,character,character-method |
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| chmMakePrivate,character,ngchm-method |
Man page
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| chmMakePrivate,ngchmServer,character-method |
Man page
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| chmMakePrivate,ngchmServer,ngchm-method |
Man page
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| chmMakePublic |
Man page
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| chmMakePublic,character,character-method |
Man page
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| chmMakePublic,character,ngchm-method |
Man page
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| chmMakePublic,ngchmServer,character-method |
Man page
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| chmMakePublic,ngchmServer,ngchm-method |
Man page
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| chmManager |
Man page
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| chmName |
Man page
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| chmName,ngchm-method |
Man page
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| chmNew |
Man page
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| chmNewColorMap |
Man page
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| chmNewCovariate |
Man page
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| chmNewCovariateBar |
Man page
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| chmNewDataLayer |
Man page
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| chmNewDataset |
Man page
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| chmNewDialog |
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| chmNewFunction |
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| chmNewProperty |
Man page
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| chmNewServer |
Man page
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| chmOriginalColOrder |
Man page
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| chmOriginalRowOrder |
Man page
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| chmProperties |
Man page
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| chmProperty |
Man page
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| chmProperty<- |
Man page
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| chmRandomColOrder |
Man page
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| chmRandomRowOrder |
Man page
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| chmRegisterAxisFunction |
Man page
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| chmRegisterFunction |
Man page
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| chmRegisterGetMetadataFunction |
Man page
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| chmRegisterMatrixFunction |
Man page
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| chmRegisterToolboxFunction |
Man page
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| chmRegisterType |
Man page
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| chmRegisterTypeMapper |
Man page
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| chmRegisterTypeSplitter |
Man page
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| chmRowOrder<- |
Man page
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| chmRowOrder<-,ngchm,optDendrogram-method |
Man page
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| chmServer |
Man page
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| chmSetCollection |
Man page
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| chmSetCredentials |
Man page
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| chmSetCredentials,character,character-method |
Man page
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| chmSetCredentials,ngchmServer,character-method |
Man page
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| chmSetDeployServerConfig |
Man page
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| chmStringopFunction |
Man page
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| chmTreeGaps |
Man page
Source code
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| chmUninstall |
Man page
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| chmUninstall,character-method |
Man page
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| chmUninstall,ngchm-method |
Man page
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| chmUrlBase |
Man page
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| chmUrlBase,ngchmServer-method |
Man page
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| chmUserDendrogramToShaid |
Man page
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| chmUserLabelsToShaid |
Man page
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| chmWriteCustomJS |
Man page
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| cos.dist1 |
Man page
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| dim.ngchmLayer |
Source code
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| dim.ngchmVersion2 |
Source code
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| dimnames.ngchmLayer |
Source code
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| dimnames.ngchmVersion2 |
Source code
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| getuuid |
Source code
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| gitHashObject |
Man page
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| initLogging |
Man page
Source code
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| loadJavascript |
Source code
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| loadTextConfig |
Source code
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| ngchm-class |
Man page
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| ngchmAddDatasetBlob |
Man page
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| ngchmAddMatrixToCollection |
Man page
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| ngchmAddObjectToCollection |
Man page
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| ngchmAxis-class |
Man page
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| ngchmAxisFunction-class |
Man page
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| ngchmAxisType-class |
Man page
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| ngchmBar-class |
Man page
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| ngchmCSS-class |
Man page
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| ngchmCollectionInCollection |
Man page
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| ngchmCollectionTree |
Man page
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| ngchmColormap-class |
Man page
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| ngchmCovariate-class |
Man page
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| ngchmCreateServerProtocol |
Man page
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| ngchmDataset-class |
Man page
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| ngchmDialog-class |
Man page
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| ngchmFindRepo |
Man page
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| ngchmGetDataFileShaid |
Man page
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| ngchmGetEnv |
Man page
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| ngchmGetHandleHTTR |
Man page
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| ngchmGetLabels |
Man page
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| ngchmGetLabelsStr |
Man page
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| ngchmGetProtoParam |
Man page
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| ngchmGetServerProtocol |
Man page
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| ngchmInitShaidyRepository |
Man page
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| ngchmJS-class |
Man page
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| ngchmLayer-class |
Man page
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| ngchmListServerProtocols |
Man page
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| ngchmLoadDatasetBlob |
Man page
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| ngchmMakeFormat.original |
Man page
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| ngchmMakeFormat.shaidy |
Man page
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| ngchmMatrixFunction-class |
Man page
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| ngchmMenuItem-class |
Man page
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| ngchmMetaData-class |
Man page
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| ngchmNewBar |
Man page
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| ngchmNewCollection |
Man page
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| ngchmOverview-class |
Man page
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| ngchmProperty-class |
Man page
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| ngchmProtoParamCheck |
Man page
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| ngchmPushSourceRepository |
Man page
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| ngchmPushSourceServer |
Man page
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| ngchmPushTempRepository |
Man page
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| ngchmRegisterServer |
Man page
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| ngchmRelated-class |
Man page
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| ngchmRelatedGroup-class |
Man page
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| ngchmRenderChm |
Man page
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| ngchmResponseJSON |
Man page
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| ngchmRowCenter |
Man page
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| ngchmSaveAsDatasetBlob |
Man page
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| ngchmSaveAsDendrogramBlob |
Man page
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| ngchmSaveChmAsBlob |
Man page
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| ngchmServer-class |
Man page
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| ngchmServerProtocol-class |
Man page
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| ngchmShaidyInit |
Man page
Source code
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| ngchmTemplate-class |
Man page
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| ngchmTileDataset |
Man page
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| ngchmTypeMapper-class |
Man page
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| ngchmUnregisterServer |
Man page
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| ngchmValueProp-class |
Man page
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| ngchmVersion2-class |
Man page
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| nr.as.hclust.dendrogram |
Source code
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| optDendrogram-class |
Man page
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| orderMethod |
Source code
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| plot.ngchmVersion2 |
Man page
Source code
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| prepDataLayer |
Source code
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| print.ngchm.type.info |
Man page
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| print.shaidyRepo |
Man page
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| progressFeedback |
Source code
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| readTile |
Man page
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| s4ToJSON |
Source code
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| s4ToList |
Source code
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| shaid-class |
Man page
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| shaidyAddFileBlob |
Man page
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| shaidyBlobExists |
Man page
Source code
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| shaidyCopyBlob |
Man page
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| shaidyCreateProtoBlob |
Man page
Source code
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| shaidyFinalizeProtoBlob |
Man page
Source code
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| shaidyFindRepo |
Man page
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| shaidyGetComponents |
Man page
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| shaidyGetComponents,ngchm-method |
Man page
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| shaidyGetComponents,ngchmCovariate-method |
Man page
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| shaidyGetComponents,ngchmDataset-method |
Man page
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| shaidyGetShaid |
Man page
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| shaidyGetShaid,ngchm-method |
Man page
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| shaidyHashProtoBlob |
Man page
Source code
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| shaidyInit |
Man page
Source code
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| shaidyInitRepository |
Man page
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| shaidyLoadProvenanceDB |
Man page
Source code
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| shaidyLoadProvidDB |
Man page
Source code
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| shaidyLoadRepository |
Man page
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| shaidyNewCache |
Man page
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| shaidyProvenance |
Man page
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| shaidyRegisterRepoAPI |
Man page
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| shaidyRepoAPI |
Man page
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| treeCuts-class |
Man page
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| validateNewLayer |
Man page
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| verifyNumeric |
Man page
Source code
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| writeBinLines |
Source code
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| writeHCDataTSVs |
Source code
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| writeTile |
Man page
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