API for bomeara/chapter2
Creates an Initial Report for a Clade
| Global functions | |
|---|---|
| WWFload | Man page Source code |
| add_single_taxon_to_tree | Source code |
| aggregate_category | Man page Source code |
| aggregate_phydo_traits | Man page Source code |
| check_continuous | Man page Source code |
| check_numeric_vector | Man page Source code |
| collapse_all_nodes_between | Source code |
| construct_phydo_targets | Man page Source code |
| contrasts_correlations | Man page Source code |
| convert_continuous_to_discrete | Man page Source code |
| eol_data | Man page Source code |
| eol_traits | Man page Source code |
| eol_traits2 | Man page Source code |
| expand_collapsed_clades_post_pratchet | Source code |
| find_unshared_nodes | Source code |
| fishbase_genus_query | Man page |
| fishbase_species_query | Man page |
| gbif_species_query | Man page |
| gbif_taxon_query | Man page |
| get_all_species_only_from_datelife | Source code |
| get_best_corhmm | Source code |
| get_combie_image_summary | Man page Source code |
| get_datelife_all | Man page Source code |
| get_datelife_biggest | Man page Source code |
| get_descendant_species | Man page Source code |
| get_eol | Man page Source code |
| get_genbank_count | Man page Source code |
| get_genbank_count_by_gene | Man page Source code |
| get_location_realm_biome | Man page Source code |
| get_node_lineage | Source code |
| get_otol | Man page Source code |
| get_phydo_data | Man page Source code |
| get_pubmed | Man page Source code |
| get_pubmed_count_only | Man page Source code |
| get_pubmed_info_on_OTOL | Man page Source code |
| get_wikipedia_pics | Man page Source code |
| get_wikipedia_summary | Man page Source code |
| locality_add_habitat_biome | Man page Source code |
| locality_clean | Man page Source code |
| match_data | Man page Source code |
| merging_trees_with_MRP | Source code |
| parsimony_search_clade_collapse | Source code |
| pbdb_taxon_query | Man page Source code |
| phydo_convert_to_Beaulieu_data | Man page Source code |
| phydo_drop_type | Man page Source code |
| phydo_fitGeiger | Man page Source code |
| plot_gis | Man page Source code |
| plot_pubmed_info_on_OTOL | Man page Source code |
| pruneToGenera | Source code |
| reconstruct_apomorphy | Man page Source code |
| remove_nchar_zero | Source code |
| render_phydo | Man page Source code |
| render_quarto | Man page Source code |
| reroot.tree | Man page Source code |
| run_biogeobears | Man page Source code |
| run_corHMM | Man page Source code |
| run_misse | Man page Source code |
| run_phydo | Man page Source code |
| spocc_taxon_query | Man page Source code |
