Man pages for boxiangliu/vsea
Variant Set Enrichment Analysis
| calc_enrichment | Calculates enrichment p-values based on GREGOR |
| calc_odds_ratio | Calculates odds ratio between foreground variant overlap and... |
| count_overlap | Count overlap between variant and region |
| create_index_set | Merge the background_ls into an index_set |
| make_regions | Helper function to make a region 'data.table' |
| overlap | Find overlap between variants and genomic region |
| read_snpsnap | Load the SNPsnap dataset... |
| select_background_variants | Select matched background variants |
| select_LD_variants | Select variants in LD with the index variants |
| vsea | Variant Set Enrichment Analysis |
| vsea-package | Variant Set Enrichment Analysis |
