|calc_enrichment||Calculates enrichment p-values based on GREGOR|
|calc_odds_ratio||Calculates odds ratio between foreground variant overlap and...|
|count_overlap||Count overlap between variant and region|
|create_index_set||Merge the background_ls into an index_set|
|make_regions||Helper function to make a region 'data.table'|
|overlap||Find overlap between variants and genomic region|
|read_snpsnap||Load the SNPsnap dataset...|
|select_background_variants||Select matched background variants|
|select_LD_variants||Select variants in LD with the index variants|
|vsea||Variant Set Enrichment Analysis|
|vsea-package||Variant Set Enrichment Analysis|
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