Man pages for boxiangliu/vsea
Variant Set Enrichment Analysis

calc_enrichmentCalculates enrichment p-values based on GREGOR
calc_odds_ratioCalculates odds ratio between foreground variant overlap and...
count_overlapCount overlap between variant and region
create_index_setMerge the background_ls into an index_set
make_regionsHelper function to make a region 'data.table'
overlapFind overlap between variants and genomic region
read_snpsnapLoad the SNPsnap dataset...
select_background_variantsSelect matched background variants
select_LD_variantsSelect variants in LD with the index variants
vseaVariant Set Enrichment Analysis
vsea-packageVariant Set Enrichment Analysis
boxiangliu/vsea documentation built on Dec. 2, 2017, 8:29 p.m.