vsea-package: Variant Set Enrichment Analysis

In boxiangliu/vsea: Variant Set Enrichment Analysis

Description

VSEA estimates the enrichment of overlap between genetic variants and genomic regions. It does this by selecting matched control variants and estimate the odds ratio between the probability of overlap between the foreground variants and genomic regions and that of the background variants. To account for LD, VSEA selects LD proxies based on 1000 Genomes phase 3 data. VSEA takes as input a set of genetic variants, and a set of genomic regions. It outputs the enrichment, standard error of the enrichment, and enrichment P-value.

Details

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~~ An overview of how to use the package, including the most important ~~ ~~ functions ~~

Author(s)

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Maintainer: NA

References

~~ Literature or other references for background information ~~

See Also

~~ Optional links to other man pages, e.g. ~~ ~~ <pkg> ~~

Examples

~~ simple examples of the most important functions ~~

boxiangliu/vsea documentation built on May 20, 2019, 5:56 p.m.