vsea: Variant Set Enrichment Analysis
In boxiangliu/vsea: Variant Set Enrichment Analysis
Description
Usage
Arguments
Value
Description
Variant Set Enrichment Analysis
Usage
1
2
vsea(snp, region, population,
plink = "/Users/boshliu/Documents/tools/plink_mac/plink", bg_size = 200)
Arguments
snp
A vector of SNP IDs (format: chr:pos, e.g. 12:56115585)
region
A data.table of genomic regions. Must have three columns
chr, start and end
plink
The path to plink
bg_size
The number of background variant per SNP ID. Default = 200
Value
A list with two elements. The first element contains enrichment
P-value. The second element contains enrichment odds ratio and standard error
boxiangliu/vsea documentation built on May 20, 2019, 5:56 p.m.
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Description Usage Arguments Value
Description
Variant Set Enrichment Analysis
Usage
1 2 | vsea(snp, region, population,
plink = "/Users/boshliu/Documents/tools/plink_mac/plink", bg_size = 200)
|
Arguments
snp |
A vector of SNP IDs (format: chr:pos, e.g. 12:56115585) |
region |
A |
plink |
The path to plink |
bg_size |
The number of background variant per SNP ID. Default = 200 |
Value
A list with two elements. The first element contains enrichment P-value. The second element contains enrichment odds ratio and standard error
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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