Files in boyinggong/methcp
Differential methylation anlsysis for bisulfite sequencing data
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/MethCP.R
R/calcLociStat.R
R/calcLociStatTimeCourse.R
R/createBsseqObject.R
R/getSigRegion.R
R/methcpFromStat.R
R/segmentMethCP.R
R/utils.R
README.md
inst/CITATION
inst/NEWS.Rd
inst/extdata/GSM2481288_mC_Col-0_DS_r1.tsv
inst/extdata/GSM2481289_mC_Col-0_DS_r2.tsv
inst/extdata/GSM2481290_mC_Col-0_0DAI_r1.tsv
inst/extdata/GSM2481291_mC_Col-0_0DAI_r2.tsv
inst/extdata/GSM2481292_mC_Col-0_1DAI_r1.tsv
inst/extdata/GSM2481293_mC_Col-0_1DAI_r2.tsv
inst/extdata/GSM2481294_mC_Col-0_2DAI_r1.tsv
inst/extdata/GSM2481295_mC_Col-0_2DAI_r2.tsv
inst/extdata/GSM2481296_mC_Col-0_3DAI_r1.tsv
inst/extdata/GSM2481297_mC_Col-0_3DAI_r2.tsv
inst/extdata/GSM2481298_mC_Col-0_4DAI_r1.tsv
inst/extdata/GSM2481299_mC_Col-0_4DAI_r2.tsv
inst/extdata/GSM2481300_mC_rdd_DS_r1.tsv
inst/extdata/GSM2481301_mC_rdd_DS_r2.tsv
inst/extdata/GSM2481302_mC_rdd_0DAI_r1.tsv
inst/extdata/GSM2481303_mC_rdd_0DAI_r2.tsv
inst/extdata/GSM2481304_mC_rdd_1DAI_r1.tsv
inst/extdata/GSM2481305_mC_rdd_1DAI_r2.tsv
inst/extdata/GSM2481306_mC_rdd_2DAI_r1.tsv
inst/extdata/GSM2481307_mC_rdd_2DAI_r2.tsv
inst/extdata/GSM2481308_mC_rdd_3DAI_r1.tsv
inst/extdata/GSM2481309_mC_rdd_3DAI_r2.tsv
inst/extdata/GSM2481310_mC_rdd_4DAI_r1.tsv
inst/extdata/GSM2481311_mC_rdd_4DAI_r2.tsv
inst/extdata/control1.txt
inst/extdata/control2.txt
inst/extdata/control3.txt
inst/extdata/meta_data.txt
inst/extdata/treatment1.txt
inst/extdata/treatment2.txt
inst/extdata/treatment3.txt
man/MethCP-class.Rd
man/calcLociStat.Rd
man/calcLociStatTimeCourse.Rd
man/createBsseqObject.Rd
man/getSigRegion.Rd
man/methcpFromStat.Rd
man/segmentMethCP.Rd
man/show-MethCP-method.Rd
tests/testthat.R
tests/testthat/setup_data.R
tests/testthat/test-MethCP.R
tests/testthat/test-MethCPTimeCourse.R
tests/testthat/test-constructor.R
tests/testthat/test-methcpFromStat.R
vignettes/methcp.Rmd
