View source: R/GetCellLineDEFun.R
GetCellLineDEFun | R Documentation |
This function computes the median expression of a gene across all cell lines and further computed the fold change of that gene to the computed median expression. A gene was considered up if the fold-change ≥ 4 and down if the fold-change ≤ −4.
GetCellLineDEFun( RnaSeq_data, parallel = c("TRUE", "FALSE"), ncores = 2, CTDDirectory = "~" )
RnaSeq_data |
A R dataframe with gene-centric expression values of cell lines. Rows are the genes, columns are the tumor samples. |
parallel |
A boolean value ('TRUE' or 'FALSE')indicating if the users want to run this function in multi-core. |
ncores |
A integer value for the number of cores. |
CTDDirectory |
A character string for the file path of the directory for the output to be stored. |
Created By: Banabithi Bose| Date Created: 4/10/2022 | Stage 3 | Function 2 |
R dataframe objects each with a single column containing DE genes for each cell line. The column is labeled as gene.
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