SampleExprFun: Sample-specific deconvoluted gene expression profile.

In bozdaglab/CTDPathSim2.0: Computing multi-omics driven similarity scores between patient tumor samples and cell lines for personalized medicine

Sample-specific deconvoluted gene expression profile.

Description

This is the place for description.

Usage

SampleExprFun(Deconv_expression, Deconv_proportions, CTDDirectory = "~")

Arguments

Deconv_expression	A R dataframe with the deconvoluted gene expression values for each gene in constituent cell types.
Deconv_proportions	A R dataframe with the estimated proportions of constituent cell types in samples.
CTDDirectory	A character string for the file path of the directory for the output to be stored.

Details

Created By: Banabithi Bose| Date Created: 4/10/2022 | Stage 2 | Function 2 |

Value

R dataframes including the deconvoluted gene expression profile for each sample in the specified directory. The rows are the genes and the columns are the cell types.This function labels the columns as V1, V2, V3,....etc.

bozdaglab/CTDPathSim2.0 documentation built on April 14, 2022, 12:39 a.m.