Files in bozdaglab/CTDPathSim2.0
Computing multi-omics driven similarity scores between patient tumor samples and cell lines for personalized medicine
.Rbuildignore
.Rhistory
.gitignore
CTDPathSim2.0.Rproj
DESCRIPTION
Data/CTDPathSim2.RData
Data/hello
LICENSE
Meta/hello
Meta/vignette.rds
NAMESPACE
R/FindSimFun.R
R/GetCellLineDAFun.R
R/GetCellLineDEFun.R
R/GetCellLineDMFun.R
R/GetPathFun.R
R/GetSampleDEFun.R
R/GetSampleDMFun.R
R/PlotDeconvMethylFun.R
R/ProbeToGeneFun.R
R/RunDeconvExprFun.R
R/RunDeconvMethylFun.R
R/SampleExprFun.R
R/SampleMethylFun.R
R/edec_aux_functions.R
R/edec_stage_0.R
R/edec_stage_1.R
R/edec_stage_2.R
R/hello
R/pat_cnv.R
README.md
doc/CTDPathSim2.0.R
doc/CTDPathSim2.0.Rmd
doc/CTDPathSim2.0.html
doc/hello
man/FindSimFun.Rd
man/GetCellLineDAFun.Rd
man/GetCellLineDEFun.Rd
man/GetCellLineDMFun.Rd
man/GetPathFun.Rd
man/GetSampleDEFun.Rd
man/GetSampleDMFun.Rd
man/PlotDeconvMethylFun.Rd
man/ProbeToGeneFun.Rd
man/RunDeconvExprFun.Rd
man/RunDeconvMethylFun.Rd
man/SampleExprFun.Rd
man/SampleMethylFun.Rd
man/estimate_meth_qp.Rd
man/estimate_props_qp.Rd
man/estimate_stability.Rd
man/find_best_perm.Rd
man/hello
man/pat_cnv.Rd
man/perform_t_tests_all_classes_each_pair.Rd
man/perform_t_tests_all_classes_one_vs_rest.Rd
man/run_edec_stage_1.Rd
man/run_edec_stage_2.Rd
man/tTestWithErrorHandling.Rd
vignettes/CTDPathSim2.0.Rmd
vignettes/CTDPathSim2.0.tex
vignettes/hello
