Man pages for bozenne/MRIaggr
Management, Display, and Processing of Medical Imaging Data
| Carto3D-class | class "Carto3D" |
| Carto3D-constCarto3D | Array constructor for Carto3D objects |
| Data-MRIaggr.Pat1_red | Example of processed MRIaggr object |
| GRalgo-calcCriteriaGR | Assessment of clustering quality |
| GRalgo-calcGR | Interface to the Growing Region algorithm |
| GRalgo-calcSigmaGR | Automatic Growing Region algorithm |
| GRalgo-GRalgo | Growing Region algorithm |
| GRalgo-initGR | Growing Region initialization |
| GRalgo-plotSigmaGR | Display quality criteria for the GR algorithm |
| InputOutput-array2dt | Array to data.frame converter |
| InputOutput-constMRIaggr | Array constructor for MRIaggr object |
| InputOutput-dt2array | data.frame to array converter |
| InputOutput-readMRI | Read an image file |
| InputOutput-writeMRI | Write an image file |
| Miscellaneous-calcAUPRC | Area under the PR curve |
| Miscellaneous-constLatex | Constructor for Latex report |
| Miscellaneous-dtnorm | Truncated Normal distribution |
| Miscellaneous-EDK | Gaussian kernel |
| Miscellaneous-getFileExtention | Get file extension |
| Miscellaneous-initConstLatex | Initializateurs for the constLatex function |
| Miscellaneous-logit | Logistic transform |
| Miscellaneous-valid | Checking argument validity |
| MRIaggr-allocClinic | Allocate clinical data |
| MRIaggr-allocContrast | Allocate new contrast parameters |
| MRIaggr-allocDescStats | Allocate non standard elements |
| MRIaggr-allocHemisphere | Allocate the position of the mid-saggital plan |
| MRIaggr-allocNormalization | Allocate normalization values |
| MRIaggr-allocTable | Allocate volumic information |
| MRIaggr-allocW | Allocate a neighbourhood matrix |
| MRIaggr-boxplotMask | Boxplot spatial group characteristics |
| MRIaggr-calcBlockW | Find disjoint spatial blocks of sites |
| MRIaggr-calcBlockW_cpp | Find disjoint spatial blocks of sites |
| MRIaggr-calcBrainMask | Brain-Background discrimination |
| MRIaggr-calcContro_cpp | Compute contralateral normalization |
| MRIaggr-calcControlateral | Compute contraleral normalization values |
| MRIaggr-calcDistMask | Euclidean distance to a spatial group |
| MRIaggr-calcDistTissues | Compute descriptive statistics |
| MRIaggr-calcFilter | Image filtration |
| MRIaggr-calcGroupsCoords | Compute spatial groups |
| MRIaggr-calcGroupsCoords_cpp | Find spatial groups |
| MRIaggr-calcGroupsMask | Compute spatial groups |
| MRIaggr-calcGroupsW | Compute spatial groups |
| MRIaggr-calcGroupsW_cpp | Find spatial groups |
| MRIaggr-calcHemi_cpp | Mid-saggital plan search |
| MRIaggr-calcHemisphere | Find the mid-sagittal plan |
| MRIaggr-calcNormalization | Compute normalization values |
| MRIaggr-calcRegionaContrast | Compute regional contrast parameters |
| MRIaggr-calcROCthreshold | ROC analysis |
| MRIaggr-calcSmoothMask | Spatial regularization |
| MRIaggr-calcTableHypoReperf | Compute reperfusion and hypoperfusion tables |
| MRIaggr-calcTableLesion | Vertical distribution of the lesion |
| MRIaggr-calcThresholdMRIaggr | Image thresholding |
| MRIaggr-calcTissueType | Probabilistic tissue type segmentation |
| MRIaggr-calcW | Compute the neighbourhood matrix |
| MRIaggr-class | Class "MRIaggr" |
| MRIaggr-constCompressMRIaggr | Compress a MRIaggr object |
| MRIaggr-constReduceMRIaggr | Reduce a MRIaggr |
| MRIaggr-filtrage2D_cpp | 2D filtering |
| MRIaggr-filtrage2Dmed_cpp | 2D median filtering |
| MRIaggr-filtrage3D_cpp | 3D filtering |
| MRIaggr-filtrage3Dmed_cpp | 3D median filtering |
| MRIaggr-heatmapMRIaggr | Correlation between contrast parameters |
| MRIaggr-initCol | Color initialization |
| MRIaggr-initDisplayWindow | Device management |
| MRIaggr-initFilter | Initialization of a filter |
| MRIaggr-initIndex | Index initialization |
| MRIaggr-initMask | Initialization of the slice numbers |
| MRIaggr-initNeighborhood | Initialization of a neighbourhood filter |
| MRIaggr-initNum | Initialization of the slice numbers |
| MRIaggr-initParameter | parameter initialization |
| MRIaggr-initWindow | Display initialization |
| MRIaggr-legendMRI | Diplay a legend of a contrast map |
| MRIaggr-multiplot | Slice by slice display |
| MRIaggr-outline | Outline a region on a slice |
| MRIaggr-outlineMRIaggr | Outline a region on a slice |
| MRIaggr-plotDistClass | Plot the distribution of the contrast parameter |
| MRIaggr-plotLesion3D | 3D plot of the lesion |
| MRIaggr-plotMRI | Diplay a contrast parameter by coordinates |
| MRIaggr-plotOutline | Compute the outline of a spatial group |
| MRIaggr-plotTableLesion | Lesion volume displayed by slices |
| MRIaggr-pointsHemisphere | Add the position of the mid-sagittal plan |
| MRIaggr-selectClinic | Extract clinical data |
| MRIaggr-selectContrast | Extract contrast parameters |
| MRIaggr-selectCoords | Extract spatial coordinates |
| MRIaggr-selectDefault_value | Extract reference values |
| MRIaggr-selectDescStats | Extract non-stardard elements |
| MRIaggr-selectHemispheres | Extract the position of the lesion in each hemisphere |
| MRIaggr-selectHistory | Extract the call of the methods applied on the object |
| MRIaggr-selectIdentifier | Extract the identifier |
| MRIaggr-selectMidplane | Extract the position of the mid-sagittal plan |
| MRIaggr-selectN | Extract the number of observations |
| MRIaggr-selectNormalization | Extract the normalization values |
| MRIaggr-selectParameter | Extract parameters |
| MRIaggr-selectTable | Extract volumic information |
| MRIaggr-selectVoxelDim | Extract the data dimension |
| MRIaggr-selectVoxelSize | Extract the dimensions of a voxel |
| MRIaggr-selectW | Extract a neighbourhood matrix |
| MRIaggr-summary.MRIaggr | Summary Method for Class "MRIaggr" |
| MRIaggr-supprContrast | Remove a contrast parameter |
| MRIaggr-supprDescStats | Remove an element of ls_descStats |
| MRIaggr-writeMRIaggr | Write an image file |
| options-allocOptionsMRIaggr | Allocate new default values |
| options-optionsMRIaggr | Set or Query Default Values for MRIaggr |
| options-selectOptionsMRIaggr | Extract default values |
| Package-MRIaggr | Management, display and processing of cerebral imaging data. |
| sfMM-calcMultiPotential | Computation of the spatial potential |
| sfMM-calcMultiPotential_cpp | Computation of the spatial potential |
| sfMM-calcPotts | Spatial regularization using ICM |
| sfMM-calcPotts_cpp | Iterated conditional means for spatial regularization |
| sfMM-calcPottsParameter | Estimation of the local regularization parameters |
| sfMM-calcRadius_cpp | Compute geometric caracteristics of a spatial group |
| sfMM-rhoLvfree | Estimation of the local regularization parameters |
| sfMM-rhoMF | Estimation of the local and regional spatial correlation |
| sfMM-simulPotts | Draw a sample from a Potts model |
| sfMM-simulPotts_cpp | Potts model simulation |
| sfMM-simulPottsFast_cpp | Potts model simulation |
