MRIaggr-plotTableLesion: Lesion volume displayed by slices

In bozenne/MRIaggr: Management, Display, and Processing of Medical Imaging Data

Description

Display the lesion volume by slices using the table_lesion slot.

Usage

## S4 method for signature 'MRIaggr'
plotTableLesion(object, mask, num = NULL, type = "matplot",
         col = 1:5, lty = 1:5, lwd = 1, mgp = c(2,0.5,0), mar = rep(3,4),
         main = paste("lesion - ", object@identifier, sep = ""),
         cex.legend = 1, cex.main = 1, cex.axis = 1, cex.lab = 1,
         filename = paste(object@identifier, "plotTableLesion", sep = "_"), ...)

Arguments

object	an object of class MRIaggr. REQUIRED.
mask	the binary contrast parameter indicating the lesion. character. REQUIRED.
num	the slices to display. numeric vector or NULL.
type	the type of plot to display. Can be "matplot" or "evolution".
col	the colors with which the volumes will be displayed. character vector or numeric vector.
lty	the line type used to represent the volume. numeric vector.
lwd	the line width. postive numeric.
main	an overall title for the plot. character.
mgp	the margin line for the axis title, axis labels and axis line. positive numeric vector of size 3.
mar	the number of margin lines to be specified on the four sides of the plot. positive numeric vector of size 4.
cex.main	the expansion factor for the main title. numeric.
cex.legend	the expansion factor of the legend. positive numeric.
cex.axis	the magnification to be used for axis annotation relative to the current setting of cex. positive numeric.
cex.lab	the magnification to be used for x and y labels relative to the current setting of cex. positive numeric.
filename	the name of the file used to export the plot. character.
...	additional arguments to be passed to optionsMRIaggr for specifying the graphical parameters.

Details

ARGUMENTS:
Information about the num argument can be found in the details section of initNum.

Information about the lty, lwd, mar and mgp arguments can be found in par.

Argument(s) ... must correspond to some of the following arguments : height, numeric2logical, path, res, unit, width, window.

ARGUMENTS:
Require to have previously filled object@table_lesion. This can be done using the calcTableLesion method.

Value

None.

Examples

## load a MRIaggr object
data("MRIaggr.Pat1_red", package = "MRIaggr")

## matplot display of the lesion
plotTableLesion(MRIaggr.Pat1_red, num = 1:3, type = "matplot",
                 mask = c("MASK_DWI_t0", "MASK_T2_FLAIR_t2"))

## evolution display of the lesion
plotTableLesion(MRIaggr.Pat1_red, num = 1:3, type = "evolution",
                mask = c("MASK_DWI_t0", "MASK_T2_FLAIR_t2"))

bozenne/MRIaggr documentation built on May 13, 2019, 1:39 a.m.