Files in brandonsie/phipcc
Generate Case-Control Reports from PhIP-seq Data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/AVARDA_RCP.R
R/AnnotationGenerator.R
R/RCPGenerator.R
R/StatsGenerator.R
R/StatsGenerator_AVARDA.R
R/annotate_cc_list.R
R/compute_rcp_list.R
R/compute_stats_list.R
R/config_case_ctrl.R
R/define_plan_case_control.R
R/filter_hits.R
R/filter_hits_list.R
R/gather_sample_list.R
R/generate_clustergram.R
R/phipcc.R
R/plot1_hitfreq.R
R/plot2_hitscore.R
R/plot3_pval.R
R/prepare_AVARDA_candidate_table.R
R/prepare_AVARDA_clustergram_data.R
R/prepare_candidate_table.R
R/prepare_candidate_table_html.R
R/prepare_clustergram_data.R
R/prepare_epitope_clustergram_data.R
R/read_AVARDA.R
R/render_from_template.R
R/subset_AVARDA.R
R/subset_data.R
README.md
_config.yml
_pkgdown.yml
docs/404.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/index.html
docs/articles/larmanguide.html
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/docsearch.json
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/logo.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/AVARDA_RCPGenerator.html
docs/reference/AnnotationGenerator.html
docs/reference/RCPGenerator.html
docs/reference/StatsGenerator.html
docs/reference/StatsGenerator_AVARDA.html
docs/reference/annotate_cc_list.html
docs/reference/compute_rcp_list.html
docs/reference/compute_stats_list.html
docs/reference/config_case_control.html
docs/reference/define_plan_case_control.html
docs/reference/filter_hits.html
docs/reference/filter_hits_list.html
docs/reference/gather_sample_list.html
docs/reference/generate_clustergram.html
docs/reference/hello.html
docs/reference/index.html
docs/reference/phipcc.html
docs/reference/plot1_hitfreq.html
docs/reference/plot2_hitscore.html
docs/reference/plot3_pval.html
docs/reference/prepare_AVARDA_candidate_table.html
docs/reference/prepare_AVARDA_candidate_table_html.html
docs/reference/prepare_AVARDA_clustergram_data.html
docs/reference/prepare_candidate_table.html
docs/reference/prepare_candidate_table_html.html
docs/reference/prepare_clustergram_data.html
docs/reference/prepare_epitope_clustergram_data.html
docs/reference/read_AVARDA.html
docs/reference/render_from_template.html
docs/reference/subset_AVARDA.html
docs/reference/subset_data.html
docs/sitemap.xml
inst/example_config.tsv
inst/template_case_control_larman.Rmd
inst/template_case_control_mina.Rmd
inst/template_case_control_old.Rmd
logo.png
man/AVARDA_RCPGenerator.Rd
man/AnnotationGenerator.Rd
man/RCPGenerator.Rd
man/StatsGenerator.Rd
man/StatsGenerator_AVARDA.Rd
man/annotate_cc_list.Rd
man/compute_rcp_list.Rd
man/compute_stats_list.Rd
man/config_case_control.Rd
man/define_plan_case_control.Rd
man/filter_hits.Rd
man/filter_hits_list.Rd
man/gather_sample_list.Rd
man/generate_clustergram.Rd
man/phipcc.Rd
man/plot1_hitfreq.Rd
man/plot2_hitscore.Rd
man/plot3_pval.Rd
man/prepare_AVARDA_candidate_table.Rd
man/prepare_AVARDA_candidate_table_html.Rd
man/prepare_AVARDA_clustergram_data.Rd
man/prepare_candidate_table.Rd
man/prepare_candidate_table_html.Rd
man/prepare_clustergram_data.Rd
man/prepare_epitope_clustergram_data.Rd
man/read_AVARDA.Rd
man/render_from_template.Rd
man/subset_AVARDA.Rd
man/subset_data.Rd
phipcc.Rproj
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
vignettes/.gitignore
vignettes/larmanguide.Rmd
