StatsGenerator: performs a first round of calculations on the data such as...

Description Usage Arguments

View source: R/StatsGenerator.R

Description

performs a first round of calculations on the data such as hit frequency and Fisher's test. These calculations will be used in subsequent graphing.

Usage

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StatsGenerator(case, ctrl, case_rcp, ctrl_rcp, hit_thresh = 10,
  rcp_thresh = 0.95, stat_test = "Fisher", pval_correction = "BH",
  note_range = 1)

Arguments

case

Case data

ctrl

Control data

case_rcp

Case RCP data

ctrl_rcp

Control RCP data

hit_thresh

Enrichment hit threshold.

rcp_thresh

RCP hit threshold.

stat_test

Statistical test. Currently supports "Fisher"

pval_correction

Multiple hypothesis pvalue correction method. BH default.


brandonsie/phipcc documentation built on June 2, 2020, 6:19 a.m.