View source: R/StatsGenerator.R
performs a first round of calculations on the data such as hit frequency and Fisher's test. These calculations will be used in subsequent graphing.
1 2 3 | StatsGenerator(case, ctrl, case_rcp, ctrl_rcp, hit_thresh = 10,
rcp_thresh = 0.95, stat_test = "Fisher", pval_correction = "BH",
note_range = 1)
|
case |
Case data |
ctrl |
Control data |
case_rcp |
Case RCP data |
ctrl_rcp |
Control RCP data |
hit_thresh |
Enrichment hit threshold. |
rcp_thresh |
RCP hit threshold. |
stat_test |
Statistical test. Currently supports "Fisher" |
pval_correction |
Multiple hypothesis pvalue correction method. BH default. |
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