compute_rcp_list: Calculate relative control percentile statistic for a list of...

In brandonsie/phipcc: Generate Case-Control Reports from PhIP-seq Data

Description

Case and control should be lists of the same length. Each element of the list should contain a data frame for which to compute rcp for/against. Corresponding elements of the case and control lists should be data frames of equal number of rows.

Usage

compute_rcp_list(case, ctrl, min_hits = 0, hit_thresh = 0)

Arguments

case	Case samples for which to compute RCP.
ctrl	Control samples to compute RCP against.
min_hits	Numeric, hreshold for number of cases scoring above hit_thresh in original score required to be retained after filtering. By default, min_hits is set to 0 and thus RCP is calculated for all peptides. Setting a nonzero value for min_hits is only recommended if calculating RCP for all peptides is prohibitively slow.
hit_thresh	Vector of numeric, threshold value to apply when considering min_hits. hit_thresh is only evaluated if min_hits > 0.

brandonsie/phipcc documentation built on June 2, 2020, 6:19 a.m.