filter_hits: filter hits data to prepare for RCPGenerator
In brandonsie/phipcc: Generate Case-Control Reports from PhIP-seq Data
Description
filter hits data to prepare for RCPGenerator
Usage
1
2
filter_hits(data, min_hits_enrichment, min_hits_rcp, pval_thresh,
case_over_control = TRUE)
Arguments
data
Input data frame.
min_hits_enrichment
Threshold value for data_stats$Case.Hits.
min_hits_rcp
Threshold value for data_stats$RCP.Hits.Case
pval_thresh
Threshold Value for PValue.Min
case_over_control
Logical describing whether or not to only keep hits
for which hit frequency in cases is higher than hit frequency in controls.
brandonsie/phipcc documentation built on June 2, 2020, 6:19 a.m.
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Description
filter hits data to prepare for RCPGenerator
Usage
1 2 | filter_hits(data, min_hits_enrichment, min_hits_rcp, pval_thresh,
case_over_control = TRUE)
|
Arguments
data |
Input data frame. |
min_hits_enrichment |
Threshold value for data_stats$Case.Hits. |
min_hits_rcp |
Threshold value for data_stats$RCP.Hits.Case |
pval_thresh |
Threshold Value for PValue.Min |
case_over_control |
Logical describing whether or not to only keep hits for which hit frequency in cases is higher than hit frequency in controls. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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