source-attribution-functions: Main Source Attribution Functions

In brechtdv/FERG: DALY Calculation Framework for WHO/FERG

Description

Functions to generate normalized samples; combine exposure and food item samples; and generate foodborne burden estimates.

Usage

## Generate normalized samples
generate_samples(n, file, cols, names)

## Normalize samples by proportion foodborne
normalize_by_food(food, exp)

## Apply proportion foodborne to burden estimates
apply_prop_fb(agent, date_DALY, exp)

Arguments

n	number of samples
file	*.dis file generated by EXCALIBUR
cols	*.dis file columns to use
names	names of exposure routes or food items
food	list of food item samples
exp	list of exposure route samples
agent	agent name, abbreviated
date_DALY	date of DALY calculation

Value

generate_samples and normalize_by_food return a data frame of normalized samples; apply_prop_fb creates ‘DALYrun’ objects per country.

See Also

source-attribution-report

brechtdv/FERG documentation built on May 13, 2019, 5:05 a.m.