DALY-plots: DALY Plots

In brechtdv/FERG: DALY Calculation Framework for WHO/FERG

Description

Functions to generate various plots of DALY results.

Usage

## Uncertainty intervals
line_plot(agents, samples, asc = TRUE, names = NULL,
          ylim = NULL, ylab = "DALY (global)", ylog = TRUE,
          axis.text.x = element_text(angle = 45, hjust = 1, vjust = 1),
          col = NULL) 
        
## Barplots by (sub)region
region_barplot(x, names = NULL, xlab = NULL, ylab = NULL,
               col = NULL, nrow = 1)

## Barplots of YLD/YLL or age groups
full_barplot(..., labels = NULL, names = NULL,
             sort = c("none", "asc", "desc"), xlab = "Agent",
             ylab = "Proportion", col = NULL, nrow = 1,
             axis.text.x = element_text())

## Scatter plot of population versus patient burden
scatter_plot(x_val, y_val, fb = FALSE, names = NULL, col = NULL,
             xlog = TRUE, ylog = TRUE, labels = FALSE)

Arguments

agents	list of agents to be included in plot
samples	list of samples to be plotted
asc	logical flag; should ascending order be used?
names	vector of agent names
ylim	y-axis limits
xlab	x-axis label
ylab	y-axis label
xlog	logical flag; should x-axis be shown on log scale?
ylog	logical flag; should y-axis be shown on log scale?
axis.text.x	x axis tick labels
col	vector of colours
x	matrix of point estimates by hazard and (sub)region
nrow	number of rows in legend
...	list of samples, one for each category
labels	category labels
sort	sorting option; should be any of c("none", "asc", "desc")
x_val	matrix of point estimate and uncertainty interval, per agent
y_val	matrix of point estimate and uncertainty interval, per agent
fb	logical flag; are foodborne results used?

Value

All functions produce a ggplot2 graphic.

See Also

DALY_map, DALY-summarize, FERG_report

brechtdv/FERG documentation built on May 13, 2019, 5:05 a.m.