Description Usage Arguments Value See Also
Functions to load, merge and summarize the number of incident cases, deaths, YLDs, YLLs or DALY of getDALY_per_region
or getDALY_per_subregion
objects.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 | ## Get summary for 1 agent
summarize(x, what, rate = FALSE, age = c("all", "<5", "5+"),
denom = 1e+05, names = "all")
## Get summary for all agents
summarize_all(agents, what = "daly", rate = F, by = "region",
age = "all", fb = F)
## Load (fb) results per (sub)region
load_results(agent, by, fb)
## Get summary per (sub)region for 1 agent
get_total(agent, what = "daly", rate = FALSE,
by = c("subregion", "region"), age = c("all", "<5", "5+"), fb = FALSE)
##
get_global(x, what, by_region = FALSE, denom = 1e+05, rate = FALSE,
names = "all", age = "all")
## Get DALY samples by (sub)region for 1 agent
get_samples(agent, what = c("daly", "yld", "yll", "incidence", "cases", "deaths"),
by = c("subregion", "region"), fb = FALSE, ...)
## Get DALY samples by (sub)region for >1 agent
get_all_samples(agents, what = c("daly", "yld", "yll", "incidence", "cases", "deaths"),
by = c("subregion", "region"), fb = FALSE, ...)
## Get all samples, per outcome
get_samples_per_outcome(agent, dir, date, denom = 1e+05,
by = c("subregion", "region"), outcomes)
|
x |
object generated by |
what |
parameter to be summarized |
rate |
logical flag; should values be summarized per 100,000? |
age |
age group for which summary is made |
denom |
denominator used in rates |
names |
node name(s) for which summary is made |
agent |
vector of 4 elements: agent name, directory, date total burden, date foodborne burden |
agents |
list of |
by |
which set of results to use: |
fb |
logical flag; should foodborne results be used? |
by_region |
logical flag; should results be presented at (sub)regional level, or should they be aggregated at global level? |
dir |
agent directory |
date |
date burden estimation |
outcomes |
vector of outcomes to be used |
... |
other arguments to be passed to underlying functions |
The summarize
functions return a data frame with the mean, median, 95% uncertainty interval, and standard deviation of the specified value(s) per (sub)region and globally. The get
functions return a list of samples according to the arguments specified.
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