Man pages for brgordon17/coralclass
Metabolomics Classification of Stressed Coral From Heron Island 2011
| coralclass | coralclass: A package style research compendium for the coral... |
| create_mzdata | Create mzdata. |
| create_nmrdata | create nmrdata. |
| create_pamdata | Create pamdata. |
| figure_cell_density | Boxplots of cell density. |
| figure_fvfm | Plot of Photosynthetic Yield (FvFm). |
| figure_misclass_temporal | Temporal misclassifications figure. |
| figure_pca | PCA compound figure. |
| figure_tuning | Model tuning figure. |
| figure_vip | Important variables figure. |
| mzdata | Preprocessed LCMS data |
| mzdata_raw | Feature detection using xcms. |
| mzpls | PLS-DA analysis of LCMS data. |
| mzrf | Random Forests Analysis of LCMS data. |
| nmrdata | Preprocessed NMR data |
| nmrpls | PLS-DA analysis of NMR data. |
| nmrrf | Random Forests Analysis of 1H-NMR data. |
| pamdata | Mean daily PAM data |
| table_annotate | Annotate LCMS features |
| table_cv_conmat | Cross validation confusion matrices. |
| table_cv_performance | Cross validation performance table. |
| table_model_test | Model testing performance table. |
