table_model_test: Model testing performance table.
In brgordon17/coralclass: Metabolomics Classification of Stressed Coral From Heron Island 2011

Description Usage Arguments Details Value Note Author(s) See Also

table_model_test() reproduces the model testing performance table in section x.xx of Benjamin Gordon's PhD thesis.

1 2	table_model_test(table.name = "model_testing_table", save.table = FALSE)

`table.name`	Name of table.
`save.table`	Logical indicating if the plot should be saved to `./tables/`.

table_model_test() loads the saved models in ./inst/extdata/; reproduces then predicts the test data; calculates the confusion matrices and statistics for the test data; creates a table containing the accuracy and the class specific sensitivity and specificity for each model; saves the table to ./tables/ as a .csv file with a .txt file extension.

returns a tibble with class tbl_df.

The .txt file extension makes it easy to open the file in a text editor and copy/paste the contents to Word, where the text can be easily converted to a table. Although this function is exported, table_model_test() was not intended to be used outside of this package.

Benjamin R. Gordon

confusionMatrix tibble

brgordon17/coralclass documentation built on June 15, 2020, 9:21 p.m.