table_cv_performance: Cross validation performance table.
In brgordon17/coralclass: Metabolomics Classification of Stressed Coral From Heron Island 2011

Description Usage Arguments Details Value Note Author(s) See Also

table_cv_performance() reproduces the cross validation performance table in section x.xx of Benjamin Gordon's PhD thesis.

1 2	table_cv_performance(table.name = "CV_perform_table", save.table = FALSE)

`table.name`	Name of table.
`save.table`	Logical indicating if the plot should be saved to `./tables/`.

table_cv_performance() loads the saved models in ./inst/extdata/; calculates the cross validation confusion matrices and statistics for each model; creates a table containing the accuracy and the class specific sensitivity and specificity for each model; saves the table to ./tables/ as a .csv file with a .txt file extension.

returns a tibble with class tbl_df.

The .txt file extension makes it easy to open the file in a text editor and copy/paste the contents to Word, where the text can be easily converted to a table. Although this function is exported, table_cv_performance() was not intended to be used outside of this package.

Benjamin R. Gordon

confusionMatrix tibble

brgordon17/coralclass documentation built on June 15, 2020, 9:21 p.m.