fit_growth_grofit_parametric: Fit a Parametric Model to Growth Data (using grofit)

In briandconnelly/growthcurve: Analysis of Biological Growth

Description

fit_growth_grofit_parametric allows you to fit a parametric model to a tidy growth data set using gcFitModel from the grofit package. Several candidate models are fitted, and the model with the best AIC is returned.

Usage

fit_growth_grofit_parametric(df, time, data, ...)

fit_growth_grofit_logistic(df, time, data, ...)

fit_growth_grofit_gompertz(df, time, data, ...)

fit_growth_grofit_gompertz.exp(df, time, data, ...)

fit_growth_grofit_richards(df, time, data, ...)

fit_growth_grofit_parametric_(df, time_col, data_col, ...)

fit_growth_grofit_logistic_(df, time_col, data_col, ...)

fit_growth_grofit_gompertz_(df, time_col, data_col, ...)

fit_growth_grofit_gompertz.exp_(df, time_col, data_col, ...)

fit_growth_grofit_richards_(df, time_col, data_col, ...)

Arguments

df	a data frame
time	column in df that contains time data
data	column in df that contains growth data (default: TRUE)
...	Additional arguments for gcFitModel
time_col	String giving the name of the column in df that contains time data
data_col	String giving the name of the column in df that contains growth data

Value

A growthcurve object

See Also

grofit_wrappers

Examples

## Not run: 
# Fit the data given in columns Time and OD600
fit_growth_grofit_parametric(mydata, Time, OD600)
## End(Not run)

## Not run: 
# Fit the data given in columns Time and OD600
fit_growth_grofit_parametric_(mydata, time_col = "Time", data_col = "OD600")
## End(Not run)

briandconnelly/growthcurve documentation built on May 13, 2019, 5:13 a.m.