stat_growthcurve: ggplot2: Add a fitted growth curve

Description Usage Arguments

Description

stat_growthcurve adds a fitted growth curve got a ggplot2 plot

Usage

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stat_growthcurve(mapping = NULL, data = NULL, model = "logistic",
  geom = "line", position = "identity", na.rm = FALSE, show.legend = NA,
  inherit.aes = TRUE, ...)

Arguments

mapping

Set of aesthetic mappings created by aes or aes_. If specified and inherit.aes = TRUE (the default), it is combined with the default mapping at the top level of the plot. You must supply mapping if there is no plot mapping.

data

The data to be displayed in this layer. There are three options:

If NULL, the default, the data is inherited from the plot data as specified in the call to ggplot.

A data.frame, or other object, will override the plot data. All objects will be fortified to produce a data frame. See fortify for which variables will be created.

A function will be called with a single argument, the plot data. The return value must be a data.frame., and will be used as the layer data.

model

name of the model to fit. One of:

  • logistic: a logistic function (default)

  • logistic4p: a 4-parameter logistic function

  • gompertz: a Gompertz function

  • loess: a LOESS curve

  • linear: a linear function

  • spline: spline interpolation of the data

  • grofit_parametric: a parametric function. grofit will attempt to fit each of the following models and return the best fit according to AIC.

  • grofit_logistic: a logistic function (using grofit)

  • grofit_gompertz: a Gompertz function (using grofit)

  • grofit_gompertz.exp: a modified Gompertz function (using grofit)

  • grofit_richards: a Richards growth curve (using grofit)

  • grofit_spline: spline interpolation (using grofit)

geom

The geometric object to use display the data

position

Position adjustment, either as a string, or the result of a call to a position adjustment function.

na.rm

a logical value indicating whether NA values should be stripped before the computation proceeds.

show.legend

logical. Should this layer be included in the legends? NA, the default, includes if any aesthetics are mapped. FALSE never includes, and TRUE always includes.

inherit.aes

If FALSE, overrides the default aesthetics, rather than combining with them. This is most useful for helper functions that define both data and aesthetics and shouldn't inherit behaviour from the default plot specification, e.g. borders.

...

other arguments passed on to layer. These are often aesthetics, used to set an aesthetic to a fixed value, like color = "red" or size = 3. They may also be parameters to the paired geom/stat.


briandconnelly/growthcurve documentation built on May 13, 2019, 5:13 a.m.