sc3min_kmeans: 'kmeans' clustering of cells.

In brickyyyy/SC3min: Minimized Single-Cell Consensus Clustering

Description

This function performs kmeans clustering of the matrices contained in the transformations item of the sc3min slot of the metadata(object). It then creates and populates the following items of the sc3min slot:

• kmeans - contains a list of kmeans clusterings.

Usage

sc3min_kmeans.SingleCellExperiment(object, ks)

## S4 method for signature 'SingleCellExperiment'
sc3min_kmeans(object, ks = NULL)

Arguments

object	an object of SingleCellExperiment class
ks	a continuous range of integers - the number of clusters k to be used for sc3min clustering. Can also be a single integer.

Value

an object of SingleCellExperiment class

brickyyyy/SC3min documentation built on May 8, 2019, 8:07 a.m.