sc3min_plot_silhouette: Plot silhouette indexes of the cells
In brickyyyy/SC3min: Minimized Single-Cell Consensus Clustering
Description
A silhouette is a quantitative measure of the diagonality of the consensus
matrix. An average silhouette width (shown at the bottom left of the silhouette
plot) varies from 0 to 1, where 1 represents a perfectly block-diagonal
consensus matrix and 0 represents a situation where there is no
block-diagonal structure. The best clustering is achieved when the average
silhouette width is close to 1.
Usage
1
2
3
4
sc3min_plot_silhouette.SingleCellExperiment(object, k)
## S4 method for signature 'SingleCellExperiment'
sc3min_plot_silhouette(object, k)
Arguments
object
an object of 'SingleCellExperiment' class
k
number of clusters
brickyyyy/SC3min documentation built on May 8, 2019, 8:07 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
A silhouette is a quantitative measure of the diagonality of the consensus matrix. An average silhouette width (shown at the bottom left of the silhouette plot) varies from 0 to 1, where 1 represents a perfectly block-diagonal consensus matrix and 0 represents a situation where there is no block-diagonal structure. The best clustering is achieved when the average silhouette width is close to 1.
Usage
1 2 3 4 | sc3min_plot_silhouette.SingleCellExperiment(object, k)
## S4 method for signature 'SingleCellExperiment'
sc3min_plot_silhouette(object, k)
|
Arguments
object |
an object of 'SingleCellExperiment' class |
k |
number of clusters |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.