buenrostrolab/FigR: Functional Inference of Gene Regulation (FigR) using paired single cell ATAC-seq and RNA-seq data

This R package supports the integration of scATAC-seq and scRNA-seq data using which one can determine cis-regulatory elements linked to gene to define domains of regulatory chromatin (DORCs), and TF-gene associations using FigR. This framework is associated with (our manuscript)[https://www.sciencedirect.com/science/article/pii/S2666979X22001082] published in 2022

install.packages("remotes")
remotes::install_github("buenrostrolab/FigR")