extractTFNames: Fetch TF names
In buenrostrolab/FigR: Functional Inference of Gene Regulation (FigR) using paired single cell ATAC-seq and RNA-seq data
extractTFNames R Documentation
Fetch TF names
Description
This function fetches TF names from full motif IDs (see https://github.com/GreenleafLab/chromVARmotifs)
Usage
extractTFNames(motifIDs)
Arguments
motifIDs
vector of full motif IDs that are part of the original human or mouse pwms matrix (see https://github.com/GreenleafLab/chromVARmotifs)
Value
a vector of TF names extracted from the full motif ID (if older format with '_'), or returned as is otherwise
Author(s)
Vinay Kartha
buenrostrolab/FigR documentation built on Feb. 10, 2023, 11:26 a.m.
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| extractTFNames | R Documentation |
Fetch TF names
Description
This function fetches TF names from full motif IDs (see https://github.com/GreenleafLab/chromVARmotifs)
Usage
extractTFNames(motifIDs)
Arguments
motifIDs |
vector of full motif IDs that are part of the original human or mouse pwms matrix (see https://github.com/GreenleafLab/chromVARmotifs) |
Value
a vector of TF names extracted from the full motif ID (if older format with '_'), or returned as is otherwise
Author(s)
Vinay Kartha
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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