plotfigRHeatmap: Plot FigR heatmap

In buenrostrolab/FigR: Functional Inference of Gene Regulation (FigR) using paired single cell ATAC-seq and RNA-seq data

Plot FigR heatmap

Description

Heatmap visualization of TF-DORC associations based on the regulation scores inferred by FigR

Usage

plotfigRHeatmap(figR.d, score.cut = 1, DORCs = NULL, TFs = NULL, ...)

Arguments

figR.d	data.frame of results returned by runFigRGRN).
score.cut	numeric specifying the absolute regulation score to threshold TF-DORC connections on. Default is 1
DORCs	character specifying valid DORC gene symbols to subset heatmap to. Default is NULL (no subsetting)
TFs	character specifying valid TF gene symbols to subset heatmap to. Default is NULL (no subsetting)
...	additional parameters passed to the Heatmap)

Value

a TF-DORC filtered Heatmap generatd using Heatmap)

Author(s)

Vinay Kartha

buenrostrolab/FigR documentation built on Feb. 10, 2023, 11:26 a.m.