plotDrivers: Plot FigR scatter profile

In buenrostrolab/FigR: Functional Inference of Gene Regulation (FigR) using paired single cell ATAC-seq and RNA-seq data

Plot FigR scatter profile

Description

Scatter plot visualization of filtered TF-DORC associations based on the enrichment of each motif among the queried DORC's peaks and the correlation of the TF RNA to the DORC accessibility score

Usage

plotDrivers(figR.d, marker, score.cut = 1, label = TRUE)

Arguments

figR.d	data.frame of results returned by runFigRGRN)
marker	character specifying a valid DORC gene to restrict TF drivers for
score.cut	numeric specifying the absolute regulation score to threshold TF-DORC connections on. Default is 1
label	boolean indicating whether or not to add text labels for TF drivers passing score filter

Value

a ggplot2 object of the scatter plot of predicted TF drivers for the specified DORC

Author(s)

Vinay Kartha

buenrostrolab/FigR documentation built on Feb. 10, 2023, 11:26 a.m.