Man pages for buenrostrolab/FigR
Functional Inference of Gene Regulation (FigR) using paired single cell ATAC-seq and RNA-seq data
| cell_pairing | Pair cells |
| centerCounts | Center single-cell ATAC-seq count data |
| dorcJPlot | DORC J scatter plot |
| extractTFNames | Fetch TF names |
| getDORCScores | DORC scATAC-seq score summarization for single cells |
| motifPeakZtest | Peak-based TF motif enrichment Z-test |
| pairCells | Pair cells |
| plotDrivers | Plot FigR scatter profile |
| plotfigRHeatmap | Plot FigR heatmap |
| plotfigRNetwork | Plot FigR Network |
| plotMarker2D | Plot marker scores on single cell scatter plots |
| plotPairs | Plot ATAC-RNA scOptMatch pairs |
| rankDrivers | Rank TF drivers |
| runFigRGRN | Infer FigR TF-DORC associations |
| runGenePeakcorr | Gene-Peak correlations used for calling domains of regulatory... |
| smoothScoresNN | Smooth single cell matrix using cell kNNs |
| splitAndFetch | Split and fetch string subparts |
