Mean_pt: Drawing mean points used with overdraw()

In bugplant/plotn: Drawing better figures using a default command

Description

Drawing mean points used with overdraw()

Usage

Mean_pt(
  x = NULL,
  formula = NULL,
  data = NULL,
  at = NULL,
  SD = F,
  SE = F,
  group = NULL,
  mean.column = 1,
  dev.column = 2,
  pch = 21,
  cex = 1.5,
  col.mean = NULL,
  col.bg = NULL,
  lwd.mean = 1,
  col.bar = NULL,
  lwd.bar = 1,
  lty = 1,
  length = 0.5,
  horizontal = F,
  plot = T
)

Arguments

x	Data, e.g. numeric vector, formula, e.g. y ~ x, or other object containing analysis result
formula	formula
data	If formula is inputted in "x" or "formula" parameter, a data.frame (or list) from which the variables in formula should be taken.
at	Drawing position
SD	If set "T", standard deviation is drawn. Default is "F".
SE	If set "T", standard error is drawn. Default is "F".
group	Grouping factor
mean.column	Column which means are stored.
dev.column	Column which sd or se are stored.
pch	pch, default is 21.
cex	cex, default is 1.5.
col.mean	mean points color, default is "#000000".
col.bg	mean points background color, default is "#FFFFFF".
lwd.mean	mean lwd, default is 1.
col.bar	error bar color, default is "#000000".
lwd.bar	error bar lwd, default is 1.
lty	line type of error bar, default is 1.
length	Length of vertical bar of tip in error bar, default is 0.5
horizontal	horizontal, default is "F".
plot	If set "F", calculate is only done.

See Also

[plotn::overdraw]

Examples

d <- data.frame(x = c(1:10, 11:20, 21:30, 31:40),
                group = rep(c("A","B","C", "D"), each = 10))
pos <- barplotn(x ~ group, data = d)
overdraw(Mean_pt(x ~ group, data = d, at = pos, SD = TRUE))

pos <- barplotn(x ~ group, data = d)
overdraw(Mean_pt("x", data = d, group = "group", at = pos,
                 SE = TRUE))

pos <- barplotn(x ~ group, data = d)
overdraw(Mean_pt(d, group = "group", at = pos, SE = TRUE))
#d[,1] is data

pos <- barplotn(x ~ group, data = d)
md <- Mean_pt(x ~ group, data = d, SE = TRUE, plot = FALSE)
overdraw(Mean_pt(md, at = pos, SE = TRUE))

bugplant/plotn documentation built on June 23, 2021, 1:18 a.m.