plotn_s.default: Drawing a figure like plot()
In bugplant/plotn: Drawing better figures using a default command

Drawing a figure like plot()

plotn_s.default(
  x = NULL,
  y = NULL,
  data = NULL,
  ...,
  xlim = NULL,
  ylim = NULL,
  las = 1,
  cex.axis = 1.1,
  cex.lab = 1.3,
  font.lab = 2,
  pch = 16,
  col.dot = NULL,
  col.fill = NULL,
  col.line = NULL,
  col.bor = "transparent",
  col.bg = "#FFFFFF",
  legend = F,
  pos.leg = "outright",
  pch.leg = NULL,
  bty.leg = "n",
  bg.leg = "transparent",
  lty = 1,
  lwd.dot = 1,
  lwd.line = 1,
  pt.cex.leg = 1.5,
  tx.cex.leg = 1.1,
  pt.col.leg = NULL,
  pt.bg.leg = NULL,
  lty.leg = NULL,
  pt.lwd.leg = NULL,
  ln.lwd.leg = NULL,
  tx.col.leg = NULL,
  leg.lab = NULL,
  leg.sp = 2.5,
  inset = 1,
  leg.title = NULL,
  tit.col.leg = NULL,
  mode = "s",
  group = NULL,
  fill = F,
  line = F,
  density = NA,
  angle = 45,
  warning = F,
  mar = c(3.8, 3.8, 1, 1),
  mgp = c(2.5, 0.5, 0),
  tcl = -0.2,
  inversion = F,
  inv.col = "#FFFFFF"
)

`x`	Data, e.g. numeric vector, formula, e.g. y ~ x, or other object containing analysis result
`y`	If numeric vector is inputted in "formula" parameter, numeric vector is also inputted in y
`data`	If formula is inputted in "x" or "formula" parameter, a data.frame (or list) from which the variables in formula should be taken.
`...`	Argument to be passed to methods. Please see plot().
`xlim`	x limit
`ylim`	y limit
`las`	las, defauls is 1
`cex.axis`	axis cex, default is 1.1
`cex.lab`	label cex, default is 1.3
`font.lab`	label font size, default is 2
`pch`	pch, default is 16
`col.dot`	points color
`col.fill`	fill color
`col.line`	line color
`col.bor`	border color
`col.bg`	background color
`legend`	If legend is needed, set "T". Default is "F".
`pos.leg`	Legend position. In addition to position of legend(), "outtopright, "outright", "outbottomright" and "outbottom" are able to select. Default is "outright".
`pch.leg`	Legend pch
`bty.leg`	Legend box type. Default is ""n.
`bg.leg`	Legend background
`lty`	lty
`lwd.dot`	Points lwd, default is 1.
`lwd.line`	Line lwd, default is 1.
`pt.cex.leg`	Points cex in legend, default is 1.5.
`tx.cex.leg`	Text cex in legend, default is 1.1.
`pt.col.leg`	Points color in legend.
`pt.bg.leg`	Points background color in legend.
`lty.leg`	lty in legend.
`pt.lwd.leg`	Points lwd in legend.
`ln.lwd.leg`	Line lwd in legend.
`tx.col.leg`	Text color in legend.
`leg.lab`	Legend label
`leg.sp`	Legend space, default is 2.5.
`inset`	Legend inset, default is 1.
`leg.title`	Legend title
`tit.col.leg`	Legend title color
`mode`	Plotting mode. Setting "s" is single group plot, while setting "m" is multiple groups plot. Default is "s".
`group`	Grouping factor in setting mode = "m".
`fill`	If fill color is needed, set "T". Default is "F".
`line`	If line is needed, set "T". Default is "F".
`density`	Fill density
`angle`	Fill stripe angle, default is 45 degree.
`warning`	If it is set with T and plot is not able to outputted with default settings, warning message is outputted
`mar`	mar, default is c(3.8,3.8,1,1).
`mgp`	mgp, default is c(2.5,0.5,0).
`tcl`	tcl, default is -0.2.
`inversion`	Inversion mode. If set "T", plot is drawn with inversion color. Default is "F".
`inv.col`	Inversion color, if set inversion = "T". Default is "#FFFFFF".