boxplotn: Drawing a figure like boxplot()

In bugplant/plotn: Drawing better figures using a default command

Description

Drawing a figure like boxplot()

Usage

boxplotn(
  x = NULL,
  formula = NULL,
  data = NULL,
  ...,
  las = 1,
  cex.axis = 1.1,
  cex.lab = 1.3,
  font.lab = 2,
  lty = 1,
  outline = F,
  all = T,
  jitter.method = "jitter",
  staplelwd = NA,
  boxwex = 0.5,
  xlab = NULL,
  ylab = NULL,
  names = NULL,
  xlim = NULL,
  ylim = NULL,
  notch = F,
  horizontal = F,
  xaxt = "s",
  yaxt = "s",
  col.fill = NULL,
  col.bor = NULL,
  col.dot = NULL,
  col.stat = NULL,
  col.bg = "#FFFFFF",
  pch.dot = 16,
  pch.stat = 21,
  cex.dot = 0.7,
  cex.stat = 1,
  lwd.bor = 1,
  lwd.stat = 1,
  lwd.dot = 1,
  noise = 1,
  side = "center",
  side.sp = 0.3,
  reflect = T,
  Mean = F,
  SE = F,
  SD = F,
  legend = F,
  pos.leg = "outright",
  pch.leg = 22,
  bty.leg = "n",
  bg.leg = "transparent",
  pt.cex.leg = 2,
  tx.cex.leg = 1.1,
  pt.col.leg = NULL,
  pt.bg.leg = NULL,
  tx.col.leg = NULL,
  leg.lab = NULL,
  leg.sp = 2.5,
  inset = 1,
  leg.title = NULL,
  tit.col.leg = NULL,
  mar = c(2, 3.8, 1, 1),
  mgp = c(2.5, 0.5, 0),
  tcl = -0.2,
  add = F,
  inversion = F,
  inv.col = "#FFFFFF"
)

Arguments

x	Data, e.g. numeric vector, formula, e.g. y ~ x, or other object containing analysis result
formula	formula
data	If formula is inputted in "x" or "formula" parameter, a data.frame (or list) from which the variables in formula should be taken.
...	Argument to be passed to methods. Please see boxplot().
las	las, defauls is 1
cex.axis	axis cex, default is 1.1
cex.lab	label cex, default is 1.3
font.lab	label font size, default is 2
lty	lty
outline	If set "T", outliners are drawn. Default is "F".
all	If set "T", all points are drawn. Default is "T".
jitter.method	how to draw jitter, "jitter", "swarm", "center", "hex" and "square" are able to select. Default is "jitter".
staplelwd	staplelwd, default is "NA".
boxwex	boxwex, default is 0.5.
xlab	x label
ylab	y label
names	names
xlim	x limit
ylim	y limit
notch	notch, default is "F".
horizontal	horizontal, default is "F".
xaxt	xaxt, default is "s".
yaxt	yaxt, default is "s".
col.fill	fill color
col.bor	border color
col.dot	points color
col.stat	Mean and error bar color
col.bg	background color
pch.dot	points pch, default is 16
pch.stat	mean points pch, default is 21
cex.dot	points cex, default is 0.7
cex.stat	mean points cex, default is 1
lwd.bor	box border lwd, default is 1
lwd.stat	mean and error bar lwd, default is 1
lwd.dot	points lwd, default is 1
noise	scatter level of points, default is 1
side	move direction of boxplot, "left", "center" and "right" are able to select. Default is "center".
side.sp	Magnitude of move of boxplot, default is 0.3.
reflect	If set "T", points are not drawn in next to boxplot and reflected. Default is "T".
Mean	If set "T", mean points are drawn. Default is "F".
SE	If set "T", standard error is drawn. Default is "F".
SD	If set "T", standard deviation is drawn. Default is "F".
legend	If legend is needed, set "T". Default is "F".
pos.leg	Legend position. In addition to position of legend(), "outtopright, "outright", "outbottomright" and "outbottom" are able to select. Default is "outright".
pch.leg	Legend pch, default is 22.
bty.leg	Legend box type. Default is ""n.
bg.leg	Legend background
pt.cex.leg	Points cex in legend, default is 2.
tx.cex.leg	Text cex in legend, default is 1.1.
pt.col.leg	Points color in legend.
pt.bg.leg	Points background color in legend.
tx.col.leg	Text color in legend.
leg.lab	Legend label
leg.sp	Legend space, default is 2.5.
inset	Legend inset, default is 1.
leg.title	Legend title
tit.col.leg	Legend title color
mar	mar, default is c(2,3.8,1,1).
mgp	mgp, default is c(2.5,0.5,0).
tcl	tcl, default is -0.2.
add	If set "T", boxplot is able to overdrawn on previous boxplot. Default is "F".
inversion	Inversion mode. If set "T", plot is drawn with inversion color. Default is "F".
inv.col	Inversion color, if set inversion = "T". Default is "#FFFFFF".

bugplant/plotn documentation built on June 23, 2021, 1:18 a.m.