Files in buschlab/MBECS

Evaluation and correction of batch effects in microbiome data-sets

LICENSE.md R/data.R R/mbecs_analyses.R R/mbecs_classes.R R/mbecs_corrections.R R/mbecs_helper.R R/mbecs_plots.R R/mbecs_reports.R R/utils-pipe.R README.Rmd README.md inst/rmd/mbecReport_post.Rmd inst/rmd/mbecReport_prelim.Rmd man/MbecData.Rd man/colinScore.Rd man/dot-mbecGetData.Rd man/dot-mbecSetData.Rd man/dummy.list.Rd man/dummy.mbec.Rd man/dummy.ps.Rd man/mbecBMC.Rd man/mbecBat.Rd man/mbecBox.Rd man/mbecBoxPlot.Rd man/mbecCLR.Rd man/mbecCorrection.Rd man/mbecGetData-MbecData-method.Rd man/mbecGetData.Rd man/mbecHeat.Rd man/mbecHeatPlot.Rd man/mbecLM.Rd man/mbecMixedVariance.Rd man/mbecModelVariance.Rd man/mbecModelVarianceLM.Rd man/mbecModelVarianceLMM.Rd man/mbecModelVariancePVCA.Rd man/mbecModelVarianceRDA.Rd man/mbecModelVarianceSCOEF.Rd man/mbecMosaic.Rd man/mbecMosaicPlot.Rd man/mbecPCA-MbecData-method.Rd man/mbecPCA.Rd man/mbecPCAPlot.Rd man/mbecPN.Rd man/mbecPVCAStatsPlot.Rd man/mbecProcessInput-MbecData-method.Rd man/mbecProcessInput-list-method.Rd man/mbecProcessInput-phyloseq-method.Rd man/mbecProcessInput.Rd man/mbecRBE.Rd man/mbecRDAStatsPlot.Rd man/mbecRLE.Rd man/mbecRLEPlot.Rd man/mbecRUV2.Rd man/mbecRUV3.Rd man/mbecRUV4.Rd man/mbecReportPost.Rd man/mbecReportPrelim.Rd man/mbecRunCorrections.Rd man/mbecSCOEFStatsPlot.Rd man/mbecSVA.Rd man/mbecSVD.Rd man/mbecSetData-MbecData-method.Rd man/mbecSetData.Rd man/mbecTestModel.Rd man/mbecTransform.Rd man/mbecUpperCase.Rd man/mbecValidateModel.Rd man/mbecVarianceStats.Rd man/mbecVarianceStatsLM.Rd man/mbecVarianceStatsLMM.Rd man/mbecVarianceStatsPlot.Rd man/percentileNorm.Rd man/pipe.Rd man/poscore.Rd tests/testthat.R tests/testthat/test-analyses.R tests/testthat/test-classes.R tests/testthat/test-corrections.R tests/testthat/test-helper.R tests/testthat/test-plots.R vignettes/mbecs_vignette.Rmd