mbecReportPost: Constructs an initial report of a single data-set without...
In buschlab/MBECS: Evaluation and correction of batch effects in microbiome data-sets

Constructs an initial report of a single data-set without comparative analyses.

mbecReportPost(
  input.obj,
  model.vars = c("batch", "group"),
  type = "clr",
  return.data = FALSE
)

`input.obj,`	list of phyloseq objects to compare, first element is considered uncorrected data
`model.vars,`	required covariates to build models
`type`	One of 'otu', 'tss' or 'clr' to determine the abundance matrix to use for evaluation.
`return.data,`	TRUE will return a list of all produced plots, FALSE will start rendering the report

either a ggplot2 object or a formatted data-frame to plot from

buschlab/MBECS documentation built on Jan. 21, 2022, 1:27 a.m.

buschlab/MBECS index

README.md

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Description