Files in buschlab/MBECS
Evaluation and correction of batch effects in microbiome data-sets
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/data.R
R/mbecs_analyses.R
R/mbecs_classes.R
R/mbecs_corrections.R
R/mbecs_helper.R
R/mbecs_plots.R
R/mbecs_reports.R
R/utils-pipe.R
README.Rmd
README.md
README_files/figure-gfm/BatchEffect_Venn.png
README_files/figure-gfm/logo_LIED.png
README_files/figure-gfm/logo_Uni.png
README_files/figure-gfm/pressure-1.png
data/dummy.list.rda
data/dummy.mbec.rda
data/dummy.ps.rda
inst/rmd/mbecReport_post.Rmd
inst/rmd/mbecReport_prelim.Rmd
man/MbecData.Rd
man/colinScore.Rd
man/dot-mbecGetData.Rd
man/dot-mbecSetData.Rd
man/dummy.list.Rd
man/dummy.mbec.Rd
man/dummy.ps.Rd
man/mbecBMC.Rd
man/mbecBat.Rd
man/mbecBox.Rd
man/mbecBoxPlot.Rd
man/mbecCLR.Rd
man/mbecCorrection.Rd
man/mbecGetData-MbecData-method.Rd
man/mbecGetData.Rd
man/mbecHeat.Rd
man/mbecHeatPlot.Rd
man/mbecLM.Rd
man/mbecMixedVariance.Rd
man/mbecModelVariance.Rd
man/mbecModelVarianceLM.Rd
man/mbecModelVarianceLMM.Rd
man/mbecModelVariancePVCA.Rd
man/mbecModelVarianceRDA.Rd
man/mbecModelVarianceSCOEF.Rd
man/mbecMosaic.Rd
man/mbecMosaicPlot.Rd
man/mbecPCA-MbecData-method.Rd
man/mbecPCA.Rd
man/mbecPCAPlot.Rd
man/mbecPN.Rd
man/mbecPVCAStatsPlot.Rd
man/mbecProcessInput-MbecData-method.Rd
man/mbecProcessInput-list-method.Rd
man/mbecProcessInput-phyloseq-method.Rd
man/mbecProcessInput.Rd
man/mbecRBE.Rd
man/mbecRDAStatsPlot.Rd
man/mbecRLE.Rd
man/mbecRLEPlot.Rd
man/mbecRUV2.Rd
man/mbecRUV3.Rd
man/mbecRUV4.Rd
man/mbecReportPost.Rd
man/mbecReportPrelim.Rd
man/mbecRunCorrections.Rd
man/mbecSCOEFStatsPlot.Rd
man/mbecSVA.Rd
man/mbecSVD.Rd
man/mbecSetData-MbecData-method.Rd
man/mbecSetData.Rd
man/mbecTestModel.Rd
man/mbecTransform.Rd
man/mbecUpperCase.Rd
man/mbecValidateModel.Rd
man/mbecVarianceStats.Rd
man/mbecVarianceStatsLM.Rd
man/mbecVarianceStatsLMM.Rd
man/mbecVarianceStatsPlot.Rd
man/percentileNorm.Rd
man/pipe.Rd
man/poscore.Rd
references.json
references.yaml
tests/testthat.R
tests/testthat/test-analyses.R
tests/testthat/test-classes.R
tests/testthat/test-corrections.R
tests/testthat/test-helper.R
tests/testthat/test-plots.R
vignettes/.gitignore
vignettes/mbecs_vignette.Rmd
