Man pages for bvieth/powsimR
Power Simulations for RNA-sequencing
| Bulk_Read_Counts | Parekh et al. 2016: Gene Expression Matrices |
| estimateParam | Estimate simulation parameters |
| estimateSpike | Estimate simulation parameters for spike-ins |
| evaluateDE | Compute the confusion matrix-related quantities from... |
| evaluateDist | Model Diagnostics for RNAseq Data |
| evaluateROC | Receiver operator characteristics of simulation results |
| evaluateSim | Compute the performance related metrics from simulation... |
| GeneCounts | Ziegenhain et al. 2017: Gene Expression Matrices |
| GeneLengths_hg19 | Parekh et al. 2016: Gene Lengths |
| GeneLengths_mm10 | Ziegenhain et al. 2017: Gene Lengths |
| plotEvalDE | Visualize power assessment |
| plotEvalDist | Visualize distribution assessment |
| plotEvalROC | Visualize error rate curves and associated summary statistics |
| plotEvalSim | Visualize power assessment |
| plotParam | Visualize distributional characteristics of RNA-seq... |
| plotSpike | Visualize distributional characteristics of spike-ins |
| plotTime | Visualize computational time |
| printEvalDE | Summary table of power assessment |
| Setup | Setup options for RNA-seq count simulations |
| simulateDE | Simulate Differential Expression Pipeline |
| SpikeCounts | Ziegenhain et al. 2017: Spike-Ins Expression |
| SpikeInfo | Ziegenhain et al. 2017: Spike-Ins Information |
