Files in bvieth/powsimR

Power Simulations for RNA-sequencing

.DS_Store

.gitignore

DESCRIPTION

LICENSE.md

NAMESPACE

NEWS.md R/Estimate.R R/Evaluate.R R/Extensions.R R/Plot.R R/Setup.R R/Simulate.R R/data.R R/tbl.R R/utils_Census.R R/utils_DEdetection.R R/utils_SAVER.R R/utils_estimate.R R/utils_evaluate.R R/utils_expr.R R/utils_misc.R R/utils_normalise.R R/utils_plot.R R/utils_preprocess.R R/utils_scimpute.R R/utils_sim.R R/utils_spike.R README.Rmd README.md

_config.yml

data/Bulk_Read_Counts.rda

data/CELseq2_Gene_Read_Counts.rda

data/CELseq2_Gene_UMI_Counts.rda

data/CELseq2_SpikeInfo.rda

data/CELseq2_SpikeIns_Read_Counts.rda

data/CELseq2_SpikeIns_UMI_Counts.rda

data/DropSeq_Gene_Read_Counts.rda

data/DropSeq_Gene_UMI_Counts.rda

data/DropSeq_SpikeIns_Read_Counts.rda

data/DropSeq_SpikeIns_UMI_Counts.rda

data/GeneCounts.rda

data/GeneLengths.rda

data/GeneLengths_hg19.rda

data/GeneLengths_mm10.rda

data/MARSseq_Gene_Read_Counts.rda

data/MARSseq_Gene_UMI_Counts.rda

data/MARSseq_SpikeInfo.rda

data/MARSseq_SpikeIns_Read_Counts.rda

data/MARSseq_SpikeIns_UMI_Counts.rda

data/SCRBseq_Gene_Read_Counts.rda

data/SCRBseq_Gene_UMI_Counts.rda

data/SCRBseq_SpikeInfo.rda

data/SCRBseq_SpikeIns_Read_Counts.rda

data/SCRBseq_SpikeIns_UMI_Counts.rda

data/SmartSeq2_Gene_Read_Counts.rda

data/SmartSeq2_SpikeInfo.rda

data/SmartSeq2_SpikeIns_Read_Counts.rda

data/SmartSeq_Gene_Read_Counts.rda

data/SmartSeq_SpikeInfo.rda

data/SmartSeq_SpikeIns_Read_Counts.rda

data/SpikeCounts.rda

data/SpikeInfo.rda

doc/powsimR.R doc/powsimR.Rmd

doc/powsimR.html

docs/404.html

docs/LICENSE.html

docs/articles/estparam_gene_celseq2.png

docs/articles/estparam_spike_celseq2.png

docs/articles/evalderes_conditional_celseq2.png

docs/articles/evalderes_marginal_celseq2.png

docs/articles/evaldist.png

docs/articles/evaldist_smartseq2.png

docs/articles/evalrocres_liberal_celseq2.png

docs/articles/evalsimres_celseq2.png

docs/articles/evaltime_celseq2.png

docs/articles/index.html

docs/articles/lfcdist.jpeg

docs/articles/lfcdist.png

docs/articles/powsimR-vignette-schematic.png

docs/articles/powsimR.html

docs/articles/powsimR_files/accessible-code-block-0.0.1/empty-anchor.js

docs/articles/powsimR_files/figure-html/evalplot1-1.png

docs/articles/powsimR_files/figure-html/evalplot2-1.png

docs/articles/powsimR_files/figure-html/paramsplot-1.png

docs/articles/powsimR_files/figure-html/plotthreegrp-1.png

docs/articles/powsimR_files/figure-html/plottwogrp-1.png

docs/articles/powsimR_files/figure-html/spikeplot-1.png

docs/articles/powsimRvignetteschematic.png

docs/articles/powsimr_workflow.png

docs/articles/simeval.jpeg

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/Bulk_Read_Counts.html

docs/reference/DESetup.html

docs/reference/GeneCounts.html

docs/reference/GeneLengths_hg19.html

docs/reference/GeneLengths_mm10.html

docs/reference/Setup.html

docs/reference/SimSetup.html

docs/reference/SpikeCounts.html

docs/reference/SpikeInfo.html

docs/reference/estimateParam.html

docs/reference/estimateSpike.html

docs/reference/evaluateDE.html

docs/reference/evaluateDist.html

docs/reference/evaluateROC.html

docs/reference/evaluateSim.html

docs/reference/gene_lengths.html

docs/reference/index.html

docs/reference/insilicoNBParam.html

docs/reference/kolodziejczk_cnts.html

docs/reference/kolodziejczk_param.html

docs/reference/kolodziejczk_simDE.html

docs/reference/plotCounts.html

docs/reference/plotEvalDE.html

docs/reference/plotEvalDist.html

docs/reference/plotEvalROC.html

docs/reference/plotEvalSim.html

docs/reference/plotParam.html

docs/reference/plotSpike.html

docs/reference/plotTime.html

docs/reference/printEvalDE.html

docs/reference/scrbseq_gene_cnts.html

docs/reference/scrbseq_spike_cnts.html

docs/reference/scrbseq_spike_info.html

docs/reference/simulateCounts.html

docs/reference/simulateDE.html

docs/reference/simulateFlow.html

docs/reference/smartseq2_gene_cnts.html

docs/reference/smartseq2_spike_cnts.html

docs/reference/smartseq2_spike_info.html

inst/CITATION

man/Bulk_Read_Counts.Rd man/GeneCounts.Rd man/GeneLengths_hg19.Rd man/GeneLengths_mm10.Rd man/Setup.Rd man/SpikeCounts.Rd man/SpikeInfo.Rd man/estimateParam.Rd man/estimateSpike.Rd man/evaluateDE.Rd man/evaluateDist.Rd man/evaluateROC.Rd man/evaluateSim.Rd man/plotEvalDE.Rd man/plotEvalDist.Rd man/plotEvalROC.Rd man/plotEvalSim.Rd man/plotParam.Rd man/plotSpike.Rd man/plotTime.Rd man/printEvalDE.Rd man/simulateDE.Rd

vignettes/Bioc.bib

vignettes/estparam_gene_celseq2.png

vignettes/estparam_spike_celseq2.png

vignettes/evalderes_conditional_celseq2.png

vignettes/evalderes_marginal_celseq2.png

vignettes/evaldist_smartseq2.png

vignettes/evalrocres_liberal_celseq2.png

vignettes/evalsimres_celseq2.png

vignettes/evaltime_celseq2.png

vignettes/lfcdist.png

vignettes/logo.png

vignettes/powsimR.R vignettes/powsimR.Rmd

vignettes/powsimR.html

vignettes/powsimR.png

vignettes/powsimRvignetteschematic.png

vignettes/powsimr_workflow.pdf

vignettes/powsimr_workflow.png

bvieth/powsimR documentation built on Aug. 19, 2023, 7:48 p.m.