Files in bvieth/powsimR
Power Simulations for RNA-sequencing

.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md R/Evaluate.R R/Param.R R/Plot.R R/Setup.R R/Simulate.R R/data.R R/tbl.R R/utils_DEdetection.R R/utils_SAVER.R R/utils_Seurat.R R/utils_evaluate.R R/utils_expr.R R/utils_misc.R R/utils_normalise.R R/utils_param.R R/utils_preprocess.R R/utils_scimpute.R R/utils_sim.R R/utils_spike.R README.Rmd README.md
_config.yml
data/gene_lengths.rda
data/kolodziejczk_cnts.rda
data/kolodziejczk_param.rda
data/kolodziejczk_simDE.rda
data/scrbseq_gene_cnts.rda
data/scrbseq_spike_cnts.rda
data/scrbseq_spike_info.rda
data/smartseq2_gene_cnts.rda
data/smartseq2_spike_cnts.rda
data/smartseq2_spike_info.rda
docs/LICENSE.html
docs/articles/evaldist.png
docs/articles/index.html
docs/articles/lfcdist.jpeg
docs/articles/powsimR-vignette-schematic.png
docs/articles/powsimR.html
docs/articles/powsimR_files/figure-html/evalplot1-1.png
docs/articles/powsimR_files/figure-html/evalplot2-1.png
docs/articles/powsimR_files/figure-html/paramsplot-1.png
docs/articles/powsimR_files/figure-html/plotthreegrp-1.png
docs/articles/powsimR_files/figure-html/plottwogrp-1.png
docs/articles/powsimR_files/figure-html/spikeplot-1.png
docs/articles/simeval.jpeg
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/DESetup.html
docs/reference/SimSetup.html
docs/reference/estimateParam.html
docs/reference/estimateSpike.html
docs/reference/evaluateDE.html
docs/reference/evaluateDist.html
docs/reference/evaluateROC.html
docs/reference/evaluateSim.html
docs/reference/gene_lengths.html
docs/reference/index.html
docs/reference/insilicoNBParam.html
docs/reference/kolodziejczk_cnts.html
docs/reference/kolodziejczk_param.html
docs/reference/kolodziejczk_simDE.html
docs/reference/plotCounts.html
docs/reference/plotEvalDE.html
docs/reference/plotEvalDist.html
docs/reference/plotEvalSim.html
docs/reference/plotParam.html
docs/reference/plotSpike.html
docs/reference/plotTime.html
docs/reference/printEvalDE.html
docs/reference/scrbseq_gene_cnts.html
docs/reference/scrbseq_spike_cnts.html
docs/reference/scrbseq_spike_info.html
docs/reference/simulateCounts.html
docs/reference/simulateDE.html
docs/reference/simulateFlow.html
docs/reference/smartseq2_gene_cnts.html
docs/reference/smartseq2_spike_cnts.html
docs/reference/smartseq2_spike_info.html
inst/CITATION
inst/doc/powsimR.R inst/doc/powsimR.Rmd
inst/doc/powsimR.html
man/DESetup.Rd man/SimSetup.Rd man/estimateParam.Rd man/estimateSpike.Rd man/evaluateDE.Rd man/evaluateDist.Rd man/evaluateROC.Rd man/evaluateSim.Rd man/gene_lengths.Rd man/insilicoNBParam.Rd man/kolodziejczk_cnts.Rd man/kolodziejczk_param.Rd man/kolodziejczk_simDE.Rd man/plotCounts.Rd man/plotEvalDE.Rd man/plotEvalDist.Rd man/plotEvalSim.Rd man/plotParam.Rd man/plotSpike.Rd man/plotTime.Rd man/printEvalDE.Rd man/scrbseq_gene_cnts.Rd man/scrbseq_spike_cnts.Rd man/scrbseq_spike_info.Rd man/simulateCounts.Rd man/simulateDE.Rd man/smartseq2_gene_cnts.Rd man/smartseq2_spike_cnts.Rd man/smartseq2_spike_info.Rd
vignettes/Bioc.bib
vignettes/NBparams.jpeg
vignettes/NBparams.png
vignettes/evaldist.pdf
vignettes/evaldist.png
vignettes/lfc_examples.png
vignettes/lfcdist.jpeg
vignettes/powsimR-vignette-schematic.pdf
vignettes/powsimR-vignette-schematic.png
vignettes/powsimR.Rmd
vignettes/powsim_schematic.jpeg
vignettes/powsim_schematic.pdf
vignettes/simeval.jpeg
vignettes/spike.png
bvieth/powsimR documentation built on Sept. 28, 2018, 6:27 p.m.