API for bvieth/powsimR
Power Simulations for RNA-sequencing

Global functions
AddImputedScore Source code
Census.calc Source code
DESetup Man page Source code
FindVarGenes Source code
MR.calc Source code
PoissonBetaFit Source code
PosCounts.calc Source code
RUV.calc Source code
SCnorm.calc Source code
SCnormclust.calc Source code
SimSetup Man page Source code
TMM.calc Source code
UQ.calc Source code
bulk.NB.RNAseq_counts Source code
calculateCPM Source code
calculateExpr Source code
calculateTPM Source code
calculate_weight Source code
combine.saver Source code
count.filter Source code
counts_to_tpm Source code
de.calc Source code
depth.calc Source code
dmix Source code
dmode Source code
drimpute.impute Source code
error.matrix Source code
est.NB.bulk Source code
est.NB.sc Source code
est.ZINB.sc Source code
estimateEVGammaTheta Source code
estimateGammaTheta Source code
estimateParam Man page Source code
estimateSizeFactorsForDenseMatrix Source code
estimateSpike Man page Source code
estimateVGammaThetaInitial Source code
estimate_t Source code
evaluateDE Man page Source code
evaluateDist Man page Source code
evaluateROC Man page Source code
evaluateSim Man page Source code
find_hv_genes Source code
find_neighbors Source code
find_va_genes Source code
fitdistrplusGOF Source code
fiterror.sf Source code
fn Source code
freq.filter Source code
gene_lengths Man page
get_mix Source code
get_mix_parameters Source code
insilicoNBParam Man page Source code
kolodziejczk_cnts Man page
kolodziejczk_param Man page
kolodziejczk_simDE Man page
lasso.fxn Source code
lfc.evaluate Source code
linnormnorm.calc Source code
mputation_model8 Source code
mpute.calc Source code
mpute_nnls Source code
myAIC Source code
myGOF Source code
none.calc Source code
norm.calc Source code
plain Source code
plotCounts Man page Source code
plotEvalDE Man page Source code
plotEvalDist Man page Source code
plotEvalSim Man page Source code
plotParam Man page Source code
plotSpike Man page Source code
plotTime Man page Source code
prefilter.calc Source code
printEvalDE Man page Source code
ratio.sf Source code
relative2abs Source code
repmat Source code
run.BPSC Source code
run.DESeq2 Source code
run.DESeq2.zinbwave Source code
run.DESeq2.zinger Source code
run.EBSeq Source code
run.MAST Source code
run.NBPSeq Source code
run.NOISeq Source code
run.ROTS Source code
run.TTest Source code
run.baySeq Source code
run.checkup Source code
run.decent Source code
run.edgeR.zinbwave Source code
run.edgeR.zinger Source code
run.edgeRLRT Source code
run.edgeRQL Source code
run.estParam Source code
run.limma.trend Source code
run.limma.voom Source code
run.monocle Source code
run.params Source code
run.scDD Source code
run.scde Source code
saver.impute Source code
sc.NB.FillIn_counts Source code
sc.NB.FillIn_downsample_counts Source code
sc.NB.SampleWReplace_counts Source code
sc.NB.SampleWReplace_downsample_counts Source code
sc.ZINB.FillIn_counts Source code
sc.ZINB.FillIn_downsample_counts Source code
sc.ZINB.SampleWReplace_counts Source code
sc.ZINB.SampleWReplace_downsample_counts Source code
scimpute.impute Source code
scone.impute Source code
scran.calc Source code
scranclust.calc Source code
scrbseq_gene_cnts Man page
scrbseq_spike_cnts Man page
scrbseq_spike_info Man page
setFC Source code
setMarker Source code
seurat.impute Source code
sf.calc Source code
simRNAseq.2grp Source code
simRNAseq.multi Source code
simSpike Source code
simulateCountGenes Source code
simulateCounts Man page Source code
simulateDE Man page Source code
smartseq2_gene_cnts Man page
smartseq2_spike_cnts Man page
smartseq2_spike_info Man page
update_gmm_pars Source code
bvieth/powsimR documentation built on Sept. 28, 2018, 6:27 p.m.