Man pages for byandell/CCSanger
Utilities to get and use Sanger data for Collaborative Cross
| CCcolors | Collaborative Cross colors |
| check_interval | Check chr, start_bp, end_bp for validity |
| convert_bp | Convert to bp if in Mb |
| feature_snp | Summary of features with SNP information |
| feature_tbl | Summary of features |
| gene_exon | Get exons for set of genes |
| gene_snp | Summary of genes overlapping SNPs |
| get_feature_snp | Match features with SNPs |
| get_gene | Get gene in region |
| get.gene.locations | Helper function to set gene locations on plot. |
| get_gene_snp | Match genes with SNPs |
| get_mgi_features | Pull MGI gene tbl from SQLite database |
| get_snpinfo | Get SNP and InDel information in window around peak |
| get_svs8 | Get SVS information in window around peak |
| mgigenes_gz2sql | Convert gzipped file of MGI genes to SQLite database |
| plot_feature_tbl | Staggered plot of genes in interval |
| plot_gene_exon | Plot of exons for a gene with SNPs |
| sdp_to_pattern | Convert sdp to pattern |
| snpinfo | Summary of snpinfo object |
