get_snpinfo: Get SNP and InDel information in window around peak
In byandell/CCSanger: Utilities to get and use Sanger data for Collaborative Cross

Get SNP and InDel information from SQLite databases within window_Mbp of peak_Mbp on chri_id

1 2	get_snpinfo(chr_id, peak_Mbp, window_Mbp, datapath, info_type = c("snps", "indels"))

`chr_id`	chromosome identifier
`peak_Mbp`	position in Mbp of peak
`window_Mbp`	half-width of `window` around `peak_Mbp`
`datapath`	path to Derived Data
`info_type`	type of info: one of c("snps","indels")

table of class snpinfo of top_snps near maximum lod

1	## Not run: get_snpinfo(chr_id, peak_Mbp, window_Mbp)

byandell/CCSanger documentation built on May 13, 2019, 9:26 a.m.

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