plot_gene_exon: Plot of exons for a gene with SNPs

In byandell/CCSanger: Utilities to get and use Sanger data for Collaborative Cross

Description

Uses gene_plot to plot genes, exons, mRNA with SNPs.

Usage

plot_gene_exon(gene_exon, top_snps_tbl = NULL, plot_now = TRUE,
  genes = unique(gene_exon$gene), ...)

## S3 method for class 'gene_exon'
autoplot(x, ...)

## S3 method for class 'gene_exon'
plot(x, ...)

Arguments

top_snps_tbl	table from top_snps
plot_now	plot now if TRUE
...	arguments passed along to gene_plot
exon_tbl	tbl of feature information from query_variants; see package qtl2db

Value

list of ggplots (see gene_plot)

Author(s)

Brian S Yandell, [e-mail]

byandell/CCSanger documentation built on May 13, 2019, 9:26 a.m.