qtl2cmst: Set up data for cmst function

Description Usage Arguments

Description

Set up R/qtl cross object and identifiers for use with cmst. The pheno and cov arguments must be valid names of cross$pheno. The Q.chr must be a valid chromosome identifier for cross.

Usage

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qtl2cmst(cross, pheno1, pheno2, Q.chr, Q.pos, addcov1 = NULL,
  addcov2 = NULL, intcov1 = NULL, intcov2 = NULL)

Arguments

cross

object of class cross; see read.cross.

pheno1

first phenotype name

pheno2

other phenotype names to test with pheno1

Q.chr, Q.pos

chromosome name (character) and position (in map units).

addcov1, addcov2, intcov1, intcov2

additive and interactive covariates for pheno1 and pheno2.


byandell/CausalMST documentation built on May 13, 2019, 9:26 a.m.