SimCrossCausal: Simulate cross object for CMST example

In byandell/CausalMST: Causal Model Selection Hypothesis Tests

Description

This simulates a cross object with 3 phenotypes where y1 has a causal effect on both y2 and y3. See vignette for details.

Usage

SimCrossCausal(n.ind, len, n.mar, beta, add.eff, dom.eff, sig2.1 = 1,
  sig2.2 = 1, eq.spacing = FALSE, cross.type = c("bc", "f2"),
  normalize = FALSE)

Arguments

n.ind	number of individuals
len	length(s) of chromosome(s)
n.mar	markers per chromosome
beta	causal effect(s) (slope(s)) of y1 on the other phenotypes
add.eff, dom.eff	additive and dominance effects
eq.spacing	use equal marker spacing if TRUE
cross.type	cross type (only "bc" and "f2" implemented)
normalize	use normal scores if TRUE
sig.1, sig.2	residual variances for y1 and other responses

byandell/CausalMST documentation built on May 13, 2019, 9:26 a.m.